PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D09G0400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 431aa MW: 47064.4 Da PI: 7.8081 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.2 | 3.2e-09 | 110 | 131 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+++ + G C+yGd+C+F H+ Gh_D09G0400 110 KVCNYWVQ-GNCSYGDKCRFLHS 131 68******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.277 | 25 | 51 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.94 | 26 | 50 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.61 | 106 | 133 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-7 | 107 | 131 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-6 | 108 | 132 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.1E-7 | 109 | 131 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.5E-8 | 110 | 129 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:2.130.10.10 | 4.0E-43 | 130 | 420 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 0.0094 | 137 | 176 | IPR001680 | WD40 repeat |
SuperFamily | SSF50978 | 4.85E-43 | 139 | 421 | IPR017986 | WD40-repeat-containing domain |
Pfam | PF00400 | 0.01 | 140 | 176 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 13.015 | 144 | 185 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 19.327 | 144 | 393 | IPR017986 | WD40-repeat-containing domain |
PRINTS | PR00320 | 5.5E-5 | 163 | 177 | IPR020472 | G-protein beta WD-40 repeat |
PROSITE pattern | PS00678 | 0 | 163 | 177 | IPR019775 | WD40 repeat, conserved site |
SMART | SM00320 | 3.9 | 216 | 253 | IPR001680 | WD40 repeat |
SMART | SM00320 | 0.0068 | 260 | 297 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 10.909 | 267 | 306 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 5.5E-5 | 284 | 298 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 0.0017 | 300 | 337 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.0067 | 302 | 336 | IPR001680 | WD40 repeat |
PRINTS | PR00320 | 5.5E-5 | 324 | 338 | IPR020472 | G-protein beta WD-40 repeat |
SMART | SM00320 | 8.6 | 341 | 384 | IPR001680 | WD40 repeat |
SMART | SM00320 | 310 | 387 | 423 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MDLDGGNRRV FNRLGGSSAA SPDSSKNQKV CYHWRAGKCS RFPCPFLHRE LPHPSGPAAA 60 TANGSGAPKR FADDSGFSGP ALRRGPNFNN NHNNSWGRMG ANKVVRKTEK VCNYWVQGNC 120 SYGDKCRFLH SWSLGECFTL LNHLDGHQKV VTGIALPAGM DKLYTGSKDE TVRAWDTNTG 180 QCMGVINLGG EVGCMISEGP WLFVGIPNVV KAWNTQTNQE LSLSGPVGQV YTMVVGNDLL 240 FAGTQDGTIL AWKFNAVTNN FEPAASLKGH TLAVVSLVVG ANRLYSGSMD HSIKAWSLET 300 LQCLQTLTEH TSVVMSLLCW EQFLFSCSLD QTIKVWVATE SGNLEVTYTH KEEHGLLNLR 360 GMPDSESKPV LMCSCNDNSV RLYDLPSFSE KGKIFAKQEI RAIEVGPGGL FFTGDGTGFI 420 VWKWAEAVPK P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6g6m_A | 2e-20 | 141 | 387 | 8 | 323 | Tako8 |
6g6n_A | 2e-20 | 141 | 387 | 8 | 323 | Tako8 |
6g6n_B | 2e-20 | 141 | 387 | 8 | 323 | Tako8 |
6g6n_C | 2e-20 | 141 | 387 | 8 | 323 | Tako8 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.9825 | 0.0 | boll| ovule |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX614587 | 4e-77 | JX614587.1 Gossypium hirsutum clone NBRI_GE58084 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016672517.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 48-like | ||||
Swissprot | Q9FNZ2 | 0.0 | C3H48_ARATH; Zinc finger CCCH domain-containing protein 48 | ||||
TrEMBL | A0A1U8I2Q9 | 0.0 | A0A1U8I2Q9_GOSHI; zinc finger CCCH domain-containing protein 48-like | ||||
STRING | Gorai.006G046100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1839 | 28 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25440.1 | 0.0 | zinc finger WD40 repeat protein 1 |