PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D08G2632

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 191aa MW: 21164.1 Da PI: 8.6596

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D08G2632	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.2	2.1e-18	5	55	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +g+Wv+eIr+p +r++lg+f tae Aa+a+++a+ ++g Gh_D08G2632 5 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQAAILMNG 55 59***999.******8.....334********************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	4.62E-23	5	65	No hit	No description
PROSITE profile	PS51032	22.036	6	63	IPR001471	AP2/ERF domain
SMART	SM00380	1.1E-38	6	69	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.9E-32	6	63	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.54E-20	6	64	IPR016177	DNA-binding domain
Pfam	PF00847	2.1E-11	6	55	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.9E-10	7	18	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.9E-10	29	45	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MVQTKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA ILMNGQNAKT 60 NFPPATAHKD DSPLPPKALS ELLNAKLKKC CKDQSPSLTC LRLDTDNAHI GVWQKRAGTR 120 SSSSWVMRVD LGNKKTTTPP SEDGLALSSP PIADEIEGES HVLGEEDRIA LQMIEELLNW 180 NCPMVSTSSG V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	3e-16	5	63	1	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A	3e-16	6	63	14	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Found in all organs, mostly in veins, epidermis and trichome bases. Specific expression in lateral root tips. {ECO:0000269\|PubMed:15319479}.

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:15319479}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269\|PubMed:15319479}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016728944.1	1e-141	PREDICTED: ethylene-responsive transcription factor SHINE 2-like
Swissprot	Q3E958	4e-78	SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBL	A0A1U8MTR1	1e-139	A0A1U8MTR1_GOSHI; ethylene-responsive transcription factor SHINE 2-like
STRING	Gorai.004G292600.1	1e-139	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM834	28	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11190.1	9e-72	ERF family protein

Publications ? help Back to Top
Djemal R,Khoudi H Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum). Protoplasma, 2015. 252(6): p. 1461-73 [PMID:25687296] Sadler C, et al. Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition. Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344 [PMID:26965486]