PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G2605
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 226aa    MW: 24931.7 Da    PI: 4.9591
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G2605genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19.2e-1850100155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++ +g
  Gh_D08G2605  50 PVYHGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSVKG 100
                  68*****998.**********843...6**********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-1250100IPR001471AP2/ERF domain
SMARTSM003805.6E-3551114IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-2151109IPR016177DNA-binding domain
PROSITE profilePS5103222.61651108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-3151109IPR001471AP2/ERF domain
CDDcd000182.24E-3152110No hitNo description
PRINTSPR003671.6E-95263IPR001471AP2/ERF domain
PRINTSPR003671.6E-97490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MTETESSSNS FSSPPLSPSS PGSTHSRTNS ALNSTNSLKV KRTRDSSKHP VYHGVRMRNW  60
GKWVSEIREP RKKSRIWLGT FPTPEMAARA HDVAALSVKG SSAILNFPEL ANSLPRPVSL  120
APRDVQAAAA KAAQMERFDS PPSSSSTLSS SSSLSSLVSE MDLSSGSDEL SEIVELPSLE  180
TSYESVELKD EFMFIDSVDG LFYTPPWLQS LEDCRYSFEE NLLWDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1846112976Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016733099.11e-162PREDICTED: dehydration-responsive element-binding protein 3
SwissprotQ9LYD31e-73DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A1U8N5J81e-160A0A1U8N5J8_GOSHI; dehydration-responsive element-binding protein 3
STRINGGorai.004G289800.11e-160(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-68ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]