PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D08G2279

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 338aa MW: 38513.7 Da PI: 9.9922

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D08G2279	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.9	1.6e-31	271	328	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYeg+Hnh+ Gh_D08G2279 271 DQYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCLEDPSMLIVTYEGDHNHS 328 9***********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	5.4E-18	222	267	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	7.5E-34	257	328	IPR003657	WRKY domain
PROSITE profile	PS50811	29.964	264	330	IPR003657	WRKY domain
SuperFamily	SSF118290	7.06E-27	267	328	IPR003657	WRKY domain
SMART	SM00774	2.1E-37	269	329	IPR003657	WRKY domain
Pfam	PF03106	6.8E-27	271	327	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MDMEEVEEAN KAAIESCNKV LSHLSLSKDQ IQFSNLMIET DEAVFKFKRV VSLLSSNGSK 60 RRKFKKITSN LPENIFLETP NCTTTLSPKL LQVYPHPNLL DKRTSIEVDF RAQHQLQLTQ 120 NLFDQKNQNP SFQMMNSSLV HHHHHHHQHR VQFQQMKNQA ADMVFSKSNS GMNLKFDGSS 180 SPTMSFLSSL SMDHGSVNSL DGNSFHLIDI PRNFGQLSHQ SRRCSFRGED GNFKCGTSST 240 KCHCSKRRKL RIKRTIKVPA ISNKVADIPP DQYSWRKYGQ KPIKGSPHPR GYYKCSSVRG 300 CPARKHVERC LEDPSMLIVT YEGDHNHSGF LSTQSAHT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	8e-20	267	327	15	74	Probable WRKY transcription factor 4
2ayd_A	8e-20	267	327	12	71	WRKY transcription factor 1
2lex_A	8e-20	267	327	15	74	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669794	0.0	KF669794.1 Gossypium hirsutum WRKY transcription factor 23 (WRKY23) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016680277.1	0.0	PREDICTED: probable WRKY transcription factor 74 isoform X1
Swissprot	Q93WU6	1e-105	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	A0A1U8IQ78	0.0	A0A1U8IQ78_GOSHI; probable WRKY transcription factor 74 isoform X1
STRING	Gorai.004G247000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3885	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	8e-91	WRKY DNA-binding protein 74

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]