PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D08G1543

Common Name

WRKY25

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 613aa MW: 70760.5 Da PI: 9.2151

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D08G1543	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	88.9	4.2e-28	134	187	1	54
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYeg 54 ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++v++tYeg Gh_D08G1543 134 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEG 187 59***************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-29	119	187	IPR003657	WRKY domain
SuperFamily	SSF118290	3.92E-25	126	188	IPR003657	WRKY domain
PROSITE profile	PS50811	26.395	129	187	IPR003657	WRKY domain
SMART	SM00774	1.8E-31	134	190	IPR003657	WRKY domain
Pfam	PF03106	2.1E-21	135	187	IPR003657	WRKY domain
Pfam	PF03901	1.2E-46	197	561	IPR005599	GPI mannosyltransferase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016757	Molecular Function	transferase activity, transferring glycosyl groups
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence Send to blast
MEGERGVPNY MLQVSFSSST PPPQAIHETG FLQFEENQVM SFLSPSQPLT TSPVSNTTNS 60 TTALRFITHN DQVVGTLDPI PKAVHDENCG SNVKDGNNNS WWRSSALEKN KVKVRRKLRE 120 PRFCFQTRSD VDVLDDGYKW RKYGQKVVKN SLHPRSYYRC THNNCRVKKR VERLSEDCRM 180 VITTYEGYDL LLVSIAAFYV LMVPYTKVEE SFNIQAMHDI LYHRHHLDNY DHLEFPGVVP 240 RTFIGAFLVS IFSSPIVLAV QLLHLPKIYS LIIVRLALGC IILSTLRFLR IQVRNKFGHQ 300 VEAFFVIFTA IQFHLLFYCS RALPNILAMG VVNLAYGHWL KGNFYTALNY LVFATTIFRC 360 DVVLLLCPLG LELLLTKSIS FWRAFKCCTV TTLLCIGLTV LVDSIMWKRF LWPEFEVFWF 420 NSVLNRSSEW GTHSIHWYFT SALPRSLLTA YPLFMLGVLL DRRLLPLVLP ALSFVVLYSK 480 LPHKELRFII SSVPIFNLSA AVAASRIYNN RKKSFWKFVN LVMLGLLLIS LGCTIITFMA 540 SYENYPSGRA LKELHQIGHL ANKSNELWVH IDPFSAMNGI SLFCENEWPW RYSKEEEITL 600 EEFGQRNFTY LIK

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence Send to blast

MEGERGVPNY MLQVSFSSST PPPQAIHETG FLQFEENQVM SFLSPSQPLT TSPVSNTTNS  60
TTALRFITHN DQVVGTLDPI PKAVHDENCG SNVKDGNNNS WWRSSALEKN KVKVRRKLRE  120
PRFCFQTRSD VDVLDDGYKW RKYGQKVVKN SLHPRSYYRC THNNCRVKKR VERLSEDCRM  180
VITTYEGYDL LLVSIAAFYV LMVPYTKVEE SFNIQAMHDI LYHRHHLDNY DHLEFPGVVP  240
RTFIGAFLVS IFSSPIVLAV QLLHLPKIYS LIIVRLALGC IILSTLRFLR IQVRNKFGHQ  300
VEAFFVIFTA IQFHLLFYCS RALPNILAMG VVNLAYGHWL KGNFYTALNY LVFATTIFRC  360
DVVLLLCPLG LELLLTKSIS FWRAFKCCTV TTLLCIGLTV LVDSIMWKRF LWPEFEVFWF  420
NSVLNRSSEW GTHSIHWYFT SALPRSLLTA YPLFMLGVLL DRRLLPLVLP ALSFVVLYSK  480
LPHKELRFII SSVPIFNLSA AVAASRIYNN RKKSFWKFVN LVMLGLLLIS LGCTIITFMA  540
SYENYPSGRA LKELHQIGHL ANKSNELWVH IDPFSAMNGI SLFCENEWPW RYSKEEEITL  600
EEFGQRNFTY LIK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-22	126	187	9	70	Probable WRKY transcription factor 4
2lex_A	1e-22	126	187	9	70	Probable WRKY transcription factor 4
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	KVRRKLR

Functional Description ? help Back to Top
Source	Description
UniProt	Required for N-linked oligosaccharide assembly. Adds the eighth mannose residue in an alpha-1,6 linkage onto the dolichol-PP-oligosaccharide precursor dolichol-PP-Man(7)GlcNAc(2). {ECO:0000269\|PubMed:20023196}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669808	0.0	KF669808.1 Gossypium hirsutum WRKY transcription factor 25 (WRKY25) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016682005.1	0.0	PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase-like isoform X2
Swissprot	A8MR93	0.0	ALG12_ARATH; Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase
TrEMBL	A0A1U8IV88	0.0	A0A1U8IV88_GOSHI; Mannosyltransferase
STRING	Gorai.004G166900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9677	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44745.1	1e-55	WRKY family protein

Publications ? help Back to Top
Hong Z, et al. Mutations of an alpha1,6 mannosyltransferase inhibit endoplasmic reticulum-associated degradation of defective brassinosteroid receptors in Arabidopsis. Plant Cell, 2009. 21(12): p. 3792-802 [PMID:20023196] Hong Z, et al. Evolutionarily conserved glycan signal to degrade aberrant brassinosteroid receptors in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2012. 109(28): p. 11437-42 [PMID:22733738] Dou L, et al. Genome-wide analysis of the WRKY gene family in cotton. Mol. Genet. Genomics, 2014. 289(6): p. 1103-21 [PMID:24942461] Baer J,Taylor I,Walker JC Disrupting ER-associated protein degradation suppresses the abscission defect of a weak hae hsl2 mutant in Arabidopsis. J. Exp. Bot., 2016. 67(18): p. 5473-5484 [PMID:27566817]