PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D08G1530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 254aa MW: 27960.6 Da PI: 5.3576 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57 | 4.9e-18 | 87 | 135 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++++g Gh_D08G1530 87 FRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 135 89***998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.958 | 86 | 143 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.66E-21 | 86 | 143 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-31 | 86 | 144 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-37 | 86 | 149 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.91E-32 | 87 | 144 | No hit | No description |
PRINTS | PR00367 | 6.5E-10 | 87 | 98 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.6E-12 | 87 | 135 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-10 | 109 | 125 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MEFGRDINIE NDASHCHNNL LSSYSVVSYT ATATSSTCSS SSTSGCHPNG VAEKRLKKGG 60 DMENDDNENK KRQRSTCGNN DSKHGTFRGV RMRSWGKWVS EIREPRKKSR IWLGTYPTAE 120 MAARAHDVAA LAIKGPSAYL NFPEIAKQLP RPATTSPKDI QAAASQAAAS TFLDTRQCNV 180 QTEAGVSHEE LHNTQESSSS PSIDDDDTLF DLPDLVIDTA DRNDGFCSYS SSAWQICAVD 240 AGFRIEEPFS WDYY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-17 | 82 | 143 | 10 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.24416 | 1e-143 | ovule |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016682022.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF034-like | ||||
Swissprot | Q8LBQ7 | 1e-63 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A1U8IV76 | 0.0 | A0A1U8IV76_GOSHI; ethylene-responsive transcription factor ERF034-like | ||||
TrEMBL | A0A2P5QCN5 | 0.0 | A0A2P5QCN5_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.004G165300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM185 | 28 | 283 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60490.1 | 3e-47 | ERF family protein |
Publications ? help Back to Top | |||
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