PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D08G1069

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 702aa MW: 77841.2 Da PI: 8.3173

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D08G1069	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	9.1e-05	96	117	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ n++rHir+H Gh_D08G1069 96 KCDKCSREFCSPINYRRHIRVH 117 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.0098	95	117	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.118	95	122	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	97	118	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence Send to blast
MDCFISQVPH SVSPLIDLSR SLPHILATSS ADVMKSEEPN DSLDTFIRQA IGKEPLLSFS 60 RAGDSSVQWI QLLHALDQQE IPGWPLLTPL KVQMQKCDKC SREFCSPINY RRHIRVHHRL 120 KKLDKDSAKN RDLLAAFWGK LSEDEAKEVV SFKDVALEEV PGSSVIKSLT TLVKRPGFSA 180 LPQVCLRAGS ALLDLVQARP SRFPISSQEL FSILDDASEG TFLCGAAVSM QKYIFDGEAG 240 KIGLDTKNLV ACTSFLVEQK LVKAWLADKD AEALRCQKLL VEEEEAAHKR QVELLERKRQ 300 KKLRQKEQKA KELRPWEMEE GKQNMDDSLE DNTPAETSSP KAVFDIDGQN AIISTDQVLP 360 ALEPIPFPNP EEGVDYRVQT EFYNQYCEPG TSQNGERRVE QVDGCQRIVV ARWKTPPKSQ 420 RVVLNGFHAN QNSHGFKSGG TNKHGTNRER IAAMGNSNKM WSRKSKAIDD GDSLQIKAGK 480 QATNQPDQNK NPELVIGSIS VPLGKNLAET HDRCPAECQT PKNNVQESFS KHDHVQIVAN 540 RSTIKFWRPV SRQERKSSLP VQNGIKEVEV IAENDGVQIS SNESYRRSSA VDGSDGVVRM 600 NLSSTLKESV QPGGLQFDGN AAKAFLAERW KEAVAGEHVT LVLSSNPKPP GCSGVEIDSS 660 EKWMVKAGAC EASTVGAAIA KYRKKPERGA KTKYIPKQRS AT

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence Send to blast

MDCFISQVPH SVSPLIDLSR SLPHILATSS ADVMKSEEPN DSLDTFIRQA IGKEPLLSFS  60
RAGDSSVQWI QLLHALDQQE IPGWPLLTPL KVQMQKCDKC SREFCSPINY RRHIRVHHRL  120
KKLDKDSAKN RDLLAAFWGK LSEDEAKEVV SFKDVALEEV PGSSVIKSLT TLVKRPGFSA  180
LPQVCLRAGS ALLDLVQARP SRFPISSQEL FSILDDASEG TFLCGAAVSM QKYIFDGEAG  240
KIGLDTKNLV ACTSFLVEQK LVKAWLADKD AEALRCQKLL VEEEEAAHKR QVELLERKRQ  300
KKLRQKEQKA KELRPWEMEE GKQNMDDSLE DNTPAETSSP KAVFDIDGQN AIISTDQVLP  360
ALEPIPFPNP EEGVDYRVQT EFYNQYCEPG TSQNGERRVE QVDGCQRIVV ARWKTPPKSQ  420
RVVLNGFHAN QNSHGFKSGG TNKHGTNRER IAAMGNSNKM WSRKSKAIDD GDSLQIKAGK  480
QATNQPDQNK NPELVIGSIS VPLGKNLAET HDRCPAECQT PKNNVQESFS KHDHVQIVAN  540
RSTIKFWRPV SRQERKSSLP VQNGIKEVEV IAENDGVQIS SNESYRRSSA VDGSDGVVRM  600
NLSSTLKESV QPGGLQFDGN AAKAFLAERW KEAVAGEHVT LVLSSNPKPP GCSGVEIDSS  660
EKWMVKAGAC EASTVGAAIA KYRKKPERGA KTKYIPKQRS AT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	295	302	ERKRQKKL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX588104	1e-59	JX588104.1 Gossypium hirsutum clone NBRI_GE22433 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012474557.1	0.0	PREDICTED: uncharacterized protein LOC105791160 isoform X1
TrEMBL	A0A0D2RXM4	0.0	A0A0D2RXM4_GOSRA; Uncharacterized protein
STRING	Gorai.004G117900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5680	25	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-157	C2H2-like zinc finger protein