PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G0306
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 725aa    MW: 79001.2 Da    PI: 5.8092
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G0306genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.97.7e-32307364260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g Hnh+k
  Gh_D08G0306 307 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPTCQVKKKVERSH-EGHITEIIYKGAHNHPK 364
                  7****************************************.***************85 PP
2WRKY103.71e-32519577159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  Gh_D08G0306 519 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHD 577
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.101301365IPR003657WRKY domain
SuperFamilySSF1182908.11E-25304365IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.4E-28304365IPR003657WRKY domain
SMARTSM007743.7E-35306364IPR003657WRKY domain
PfamPF031063.0E-24307363IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.4E-37504579IPR003657WRKY domain
SuperFamilySSF1182901.57E-28511579IPR003657WRKY domain
PROSITE profilePS5081138.664514579IPR003657WRKY domain
SMARTSM007741.5E-37519578IPR003657WRKY domain
PfamPF031066.5E-25520577IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MAGIDDNISI IGDWIPPTQS PRTFFTVMLG DDSGSKQVSK APLENKSEGL FLGENSDKMD  60
VNQGCEPSNE STFEQKSSTR AGLLERMAAR AGFNAPRLNT ENIRSTDTSL NPEIRSPYLT  120
IPPGLSPTTL LDSPVFVSNS LAQPSPTTGK FSFIPNVNDR SCIPESRDKS EDNYFEDINA  180
SSFAFKPIAE SNSSFLLGAT SKVTPASLPQ QSFSNVEVSV QSENSQPSRS VDPRKLQQQN  240
SNMLSLQADF LRSSTEKDTG SNNSADQRVF DPVGGSVEHS LPLDEPQDEE GDQRFSGDCM  300
AGGAPSEDGY NWRKYGQKQV KGSEYPRSYY KCTHPTCQVK KKVERSHEGH ITEIIYKGAH  360
NHPKPPPNRR SSIGSSNPLI DVQLELPEQT GLQNGTDGEP VWATAQKPMV AATHDWTHEN  420
IEMTSSATIC PENGTAPAPN GTHIESGDAV DASSTFSNDE DEDDRGTHGS VSLGYDGEGD  480
ESESKRRKIE AYTTEMSGAT RAIREPRVVV QTTSEVDILD DGYRWRKYGQ KVVKGNPNPR  540
SYYKCTSAGC TVRKHVERAS HDLKSVITTY EGKHNHDVPA ARNSSHVNSA TSNTATALAS  600
SSVQTHAHRP EPSQLHNSMV RPTSFGPFTL PGRQQLGPSP GFSFGMNQPG LANLAMAGLG  660
PGQPKMPVLP LHPYMPHQRQ GNEMGFRLPK GEAKMEPMSD PGLDLSNNTS VYQQLMSRLP  720
LGPQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36307580878Probable WRKY transcription factor 4
2lex_A1e-36307580878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.209250.0boll
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:21316593}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697640.0KF669764.1 Gossypium hirsutum WRKY transcription factor 24 (WRKY24) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016705380.10.0PREDICTED: probable WRKY transcription factor 2
RefseqXP_016705381.10.0PREDICTED: probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A1U8KSE50.0A0A1U8KSE5_GOSHI; probable WRKY transcription factor 2
STRINGGorai.004G034600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79542740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]