PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G0290
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 606aa    MW: 66514.9 Da    PI: 7.5249
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G0290genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.64.6e-32262319260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Gh_D08G0290 262 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQIMEIIYKGTHDHPK 319
                  8****************************************.***************85 PP
2WRKY106.21.6e-33422480159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Gh_D08G0290 422 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHN 480
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.974256320IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-26258320IPR003657WRKY domain
SuperFamilySSF1182906.67E-25259320IPR003657WRKY domain
SMARTSM007741.5E-33261319IPR003657WRKY domain
PfamPF031061.7E-24262318IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-37407482IPR003657WRKY domain
SuperFamilySSF1182902.35E-29414482IPR003657WRKY domain
PROSITE profilePS5081138.434417482IPR003657WRKY domain
SMARTSM007744.0E-39422481IPR003657WRKY domain
PfamPF031064.5E-26423479IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MHVGSNLITY RDLNKWQNGP KRSPRKSKPT TIGKNSIRET KLSTVGQGTR EGKPSTPTSD  60
IVAAGKPMEK VIPVNLFSPQ KNIRWSPAVG TGTRGQGATV DLIVNRTCDV IAEFSNVEPS  120
PTTGSLFKPQ PVHAWVASST YPESVACSNA FDERNTSCFE FKPHPISNMA SADLNHQRSE  180
QSLHIQGQNG TVLFDSSASV KSEMAGLSNE LSLSVPVHTA TSMVSVPPEV DVEELSQMGN  240
PNIGIQSGQS DHRVGGQSVS FDDGYNWRKY GQKHVKGSEF PRSYYKCTHP NCEVKKLFER  300
SHDGQIMEII YKGTHDHPKP QPSCRYSSSN IVSGQEERSD KLSSLNGRDS IYGQTVHSVE  360
PNSTADLLPV TANDDNVDDV DDDDPLSKRS RKMDGAIDII PVVRPIREPR VVVQTLSEVD  420
ILDDGYRWRK YGQKVVRGNP NPRSYYKCTN AGCPVRKHVE RASHDPKAVI TTYEGKHNHN  480
VPTARTNSHD TTGPIPVNGP SRIRSEDNGA ISLDLGVGIS SISENSSNEH QQLHSELVQC  540
HPQTGGSSFK FVQPHPMAAY YSVLNSSDMN QYGSRENPNQ GPGVEITLLN HSYAFPQSIG  600
RILMGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-35261482877Probable WRKY transcription factor 4
2lex_A1e-35261482877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697630.0KF669763.1 Gossypium hirsutum WRKY transcription factor 22 (WRKY22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012473197.10.0PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV01e-170WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A0D2P6600.0A0A0D2P660_GOSRA; Uncharacterized protein
STRINGGorai.004G033200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-147WRKY family protein