PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G0014
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 463aa    MW: 51644.9 Da    PI: 5.8951
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G0014genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.13.2e-11147195155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++grW+++I+d      + k+++lg +   +    a+++a+ k++g
  Gh_D08G0014 147 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGMYTC-DWLTLAYDRAAIKFRG 195
                  78*******************......55********99.9999999999999886 PP
2AP240.47.1e-13238288155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV+ +k  grW+A+   +     +k+++lg f+ + eAa+a+++a+ k +g
  Gh_D08G0014 238 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEVEAARAYDKAAIKCNG 288
                  89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.2E-9147205IPR016177DNA-binding domain
PROSITE profilePS5103211.904148203IPR001471AP2/ERF domain
CDDcd000181.18E-14148205No hitNo description
Gene3DG3DSA:3.30.730.101.6E-9148203IPR001471AP2/ERF domain
SMARTSM003801.4E-18148209IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-16238297IPR016177DNA-binding domain
PfamPF008475.4E-8238288IPR001471AP2/ERF domain
CDDcd000181.05E-24238298No hitNo description
Gene3DG3DSA:3.30.730.101.2E-15239296IPR001471AP2/ERF domain
SMARTSM003801.8E-31239302IPR001471AP2/ERF domain
PROSITE profilePS5103215.277239296IPR001471AP2/ERF domain
PRINTSPR003674.8E-6240251IPR001471AP2/ERF domain
PRINTSPR003674.8E-6278298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MLDLNLNVGS TESAQDSNSA APFSTERNGD CGNQMDESGT SNSSIVNDED ESCSTRANGD  60
AFTLSFDILK VGSGGNEFQN DDADVVVTRE LFPATRVGIS EGQSSGNNNK WIDHPFERKE  120
ADESRVIRQQ PSQTAKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK QVYLGMYTCD  180
WLTLAYDRAA IKFRGVDADI NFSVSDYEED MKQMKNLCKE EFVHILRRQS TGFSRGSSKY  240
RGVTLHKCGR WEARMGQFLG KKYIYLGLFD NEVEAARAYD KAAIKCNGRE AVTNFEPSTY  300
EGEIIFDTST NEGNSHNLDL NLGISPPVGN DPKENELQHH HFHSGPHDLH EGKSSRAENP  360
AGAIVSPAFE RLTGNSDQPI FWRNVYPRFF PSEERDWAWQ MHGARPTPPL LPAAASSGFS  420
FLATPPSAAI LPSNLTTPSF HFATPTATSA TPQIYIHMEE PPP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016720037.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like
SwissprotQ9SK031e-111RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A1U8LZS50.0A0A1U8LZS5_GOSHI; ethylene-responsive transcription factor RAP2-7-like
STRINGGorai.004G002100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58612747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-127related to AP2.7