PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D07G2410 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 361aa MW: 40232.1 Da PI: 8.0123 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.5 | 2.3e-08 | 125 | 146 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++f++ G Ck Gd+C FaHg Gh_D07G2410 125 SACPDFRK-GNCKKGDSCEFAHG 146 67******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 6.005 | 78 | 110 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-5 | 121 | 147 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.788 | 122 | 148 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-6 | 125 | 146 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.7E-6 | 125 | 148 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 32 | 156 | 179 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MMIRKPITRS FPTVNIPDWE TLNDSADNFP AVGFNCNAPC SPCPVEYLAA LRRYLPSNDL 60 ELDTLLDDSD VHIIDAFSCD HFRMYEFKVR RCARGRSHDW TACPYAHPGE RARRRDPRKF 120 HYSGSACPDF RKGNCKKGDS CEFAHGVFEC WLHPTRYRTQ PCKDGTCCKR RVCFFAHTPE 180 QLRVLPQQSP RGNGSGSGSG SSDMDYFGSP IRYRLDYVSS PTSILASPPI SPPSDSPPTS 240 PSGSFNSVSE LTSSVRNLQF GKAKMGTTCS RGSCFVSPRS SMLRPGSPLT PTRTPTRSGL 300 SKFELWESNN AFDEPAMERV ESGRDLRTRM YAKLSEENSL DLLDPTGSGP DVGWVSELVG 360 Y |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.8231 | 0.0 | boll| ovule |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016744797.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 23-like | ||||
Swissprot | Q9M0G2 | 1e-107 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | A0A1U8P0Q7 | 0.0 | A0A1U8P0Q7_GOSHI; zinc finger CCCH domain-containing protein 23-like | ||||
STRING | Gorai.001G024400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1249 | 27 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 2e-96 | C3H family protein |
Publications ? help Back to Top | |||
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