PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G2408
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 290aa    MW: 31817.3 Da    PI: 5.6932
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G2408genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd  l+++v+ +G+g +W + + + g++R++k+c++rw++yl
      Gh_D07G2408 14 RGPWSPEEDATLKNYVQSHGTGgNWIALPLKAGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding43.38.6e-1469118246
                      SSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd ++  +  q+G++       W++Ia+ ++ gRt++++k++w++
      Gh_D07G2408  69 GGFTEEEDNIICSLYSQMGSRqarfvlKWSLIASQLP-GRTDNDVKNYWNT 118
                      569**********************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.791966IPR017930Myb domain
SuperFamilySSF466894.3E-2511116IPR009057Homeodomain-like
SMARTSM007176.8E-111364IPR001005SANT/Myb domain
PfamPF002491.1E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-241569IPR009057Homeodomain-like
CDDcd001671.80E-81662No hitNo description
SMARTSM007173.7E-1067122IPR001005SANT/Myb domain
PROSITE profilePS5129414.84367124IPR017930Myb domain
PfamPF002498.4E-1269118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-2370124IPR009057Homeodomain-like
CDDcd001675.78E-1071118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDATLKNYVQ SHGTGGNWIA LPLKAGLKRC GKSCRLRWLN  60
YLRPDIKHGG FTEEEDNIIC SLYSQMGSRQ ARFVLKWSLI ASQLPGRTDN DVKNYWNTKL  120
KKKLLAGKSS FNVENNGGLL NANNNNIPTQ PLPYNLDYST TSLPILSDVS YGFSVSNCST  180
SQNMGLDPVM QFSTPDTITN LSQSGPNLDN SHNNIVVVSS SQEGSALSDS TGNGYDEDTG  240
SIILMDDQQF SYEFPYEFVN GVLAGPSFEF SHGDIKTSQG LNQSVATNPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23141247108B-MYB
1h8a_C2e-231412427128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4591455e-51AJ459145.1 Gossypium hirsutum partial myb117 gene, clone pGhMYB117.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017639920.10.0PREDICTED: transcription factor MYB36-like
TrEMBLA0A1U8P3720.0A0A1U8P372_GOSHI; transcription factor MYB36-like
STRINGGorai.001G024300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2211545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.14e-68myb domain protein 84