PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G2121
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 299aa    MW: 31678.9 Da    PI: 7.895
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G2121genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92.1e-09147191554
                  HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  Gh_D07G2121 147 HSIAERLRRERIAERIRGLQELVPSvN------KTDRAAMLDEIVDYVKFL 191
                  99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-14140201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.694142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-14144201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-7147191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-10148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MASNPNEAPA DGFLDQILGL PHFAHTDTGL AGSDGGLAGA PMFLHLNSAD GAGHLGRIGG  60
GGGGAFHGQV FPLGLSLEQG KGGFLKQEEA SGSGKRFREG VVDGRTASVK NVFHGQPMAG  120
AVAAAAAHPP AMRPRVRARR GQATDPHSIA ERLRRERIAE RIRGLQELVP SVNKTDRAAM  180
LDEIVDYVKF LRLQVKVLTM SRLGGAAAVA PFVIDIPLSS IEDERGESGR SQPAWEKWSN  240
DGTERHVAKL MEENVGAAMQ FLQSKALCIM PVSLAKAIYH TQPPDTSSSI VKPETDPTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151156RLRRER
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5795261e-66JX579526.1 Gossypium hirsutum clone NBRI_GE11785 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016730714.10.0PREDICTED: transcription factor UNE12-like isoform X1
SwissprotO227681e-126UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A1U8MYQ00.0A0A1U8MYQ0_GOSHI; transcription factor UNE12-like isoform X1
STRINGGorai.001G242500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-99bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]