PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G2040
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 267aa    MW: 30933.8 Da    PI: 6.5357
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G2040genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.81.9e-2017103287
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  Wt+ e+l Li+a++e++ +l+rg+lk+++Weev+  +       +    +++ qC++k+e+l++ry+ ++++ ++      s +py+d +ea
  Gh_D07G2040  17 WTHPETLNLIQAYQEKWYSLQRGQLKANQWEEVAVTVatrcglFDDSAAKTALQCRHKMEKLRRRYRSERQNLGSA-----SPWPYYDAMEA 103
                  *************************************999999889999*************************84.....57*******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-1916104No hitNo description
SMARTSM005953.3E-724109IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MSYDPSPAAK KPQPLPWTHP ETLNLIQAYQ EKWYSLQRGQ LKANQWEEVA VTVATRCGLF  60
DDSAAKTALQ CRHKMEKLRR RYRSERQNLG SASPWPYYDA MEALEQGPLP ISARPLTSIV  120
PNGHEAGNYY HNDDENNPIE EEEEDDEEHE GGNRFSKSRS INYILRRPSV VNRFSGLMKK  180
RVRTEEEGDG DAAITGKGEE DKGVELAMEI RRFAERFMRM ERKKMEIMHE TERLRKEMEN  240
KRIEMILNSE KKIVDAISTS LGSKTKE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431500.0AC243150.1 Gossypium hirsutum clone MX092F10-joe, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016711975.10.0PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLA0A218KF950.0A0A218KF95_GOSHI; Trihelix transcription factor
STRINGGorai.001G233700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102812232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.12e-59Trihelix family protein