PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G2014
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 402aa    MW: 45472.2 Da    PI: 4.4379
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G2014genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM121.86.3e-3851363128
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                  +GfrFhPt+eel+ + L +    ++ +l +vi++v di+++ePw+L   ++++++++ wyf      ky+++kr nr+t++gyWk tg+ +++++  +
  Gh_D07G2014   5 KGFRFHPTEEELIEYLLLETFGVDRDSLVQVIDQVpDICQWEPWQLAesSQLQTGDRLWYFIYAPTYKYRNSKRINRTTREGYWKPTGNARKIIDPkT 102
                  7************999999999999999999***************74348889999*************************************9878 PP

          NAM  97 gelvglkktLvfykg..rapkgektdWvmheyrl 128
                  ge++g+kktLvfykg  +++   kt Wvmhey+l
  Gh_D07G2014 103 GEVIGTKKTLVFYKGqcNDKYKIKTCWVMHEYEL 136
                  899**********98445556679********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100542.033158IPR003441NAC domain
SuperFamilySSF1019418.5E-384157IPR003441NAC domain
PfamPF023656.2E-205136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MNTVKGFRFH PTEEELIEYL LLETFGVDRD SLVQVIDQVP DICQWEPWQL AESSQLQTGD  60
RLWYFIYAPT YKYRNSKRIN RTTREGYWKP TGNARKIIDP KTGEVIGTKK TLVFYKGQCN  120
DKYKIKTCWV MHEYELVAAP NSIDIDQKTF NLCKLKKRVD ISCTDAGQSS QHKDCDDVVH  180
NQSGIKSYAG DGSNQHNIAN DGVVSNLSSH DLDDAIPKEN LHERSKECNE PEGNSGVQKL  240
NSIIEKDDKS CSSVLTNGDE TITVERSDQH NVVVAAEGFG IPSSFEYLAD EVLIPEEFFY  300
NDGFWLDELL EVPEATNNSN WIQDQSINNT EDVEFLNSII VDNDEAYLLE ENRPHPSAAD  360
NEVLGAVGSS DSMEKPSKRL RLSHDDHVET TEARAGGSIT YQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-23113613140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.251451e-143boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016711925.10.0PREDICTED: NAC domain-containing protein 83-like
TrEMBLA0A1U8LBE10.0A0A1U8LBE1_GOSHI; NAC domain-containing protein 83-like
STRINGGorai.001G231400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2220645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.22e-28TCV-interacting protein