PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G1580
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 224aa    MW: 25647.1 Da    PI: 10.3397
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G1580genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.93.8e-11100141351
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                   +GV++  k+ +W A I++      +k+++lg+ g+ eeAa ++++a+ 
  Gh_D07G1580 100 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAAHLYDRAAF 141
                  79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.5E-499156IPR001471AP2/ERF domain
PfamPF008471.8E-599142IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-8100144IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.1E-6102146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MKNQLFLFQP TKFRTKSTDK GINAKLNHWS LIDALPNGEL TQTQAPGTLL CIPKVASGSP  60
NVSGSGSSKE HHNQPFPGQP IKRRKRHKRK HVQNQEPCLM RGVYFKNMKW QAAIKVDKKQ  120
IHLGTVGSQE EAAHLYDRAA FMCGREPNFE LSEEEKQELR KFKWEEFLAY TRRSITNKKY  180
KQRLGKVEPQ KRSEPAMENS EWDNKQGVNS FSASEEFGPD SSAS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.136450.0ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016745797.11e-126PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_016745798.11e-126PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A2P5WC601e-132A0A2P5WC60_GOSBA; Uncharacterized protein
STRINGGorai.001G188300.11e-124(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61892646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.11e-49ERF family protein