PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G1571
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 129aa    MW: 14732.2 Da    PI: 11.1996
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G1571genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.37.7e-131666155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 s y+G r ++ +g+Wv+eI +p++   + r++lg+f t e+A +a++   ++++g
  Gh_D07G1571 16 SIYRGMRMRS-WGKWVSEILEPRK---KSRIWLGTFATLEMAVRAHDVTTLSIKG 66
                 579****998.*******999843...6******************987777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.01E-251675No hitNo description
SuperFamilySSF541714.12E-191675IPR016177DNA-binding domain
PROSITE profilePS5103219.5721774IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-251775IPR001471AP2/ERF domain
PfamPF008474.9E-81766IPR001471AP2/ERF domain
SMARTSM003802.0E-211780IPR001471AP2/ERF domain
PRINTSPR003673.6E-91829IPR001471AP2/ERF domain
PRINTSPR003673.6E-94056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MGDNSKAKRS SISKHSIYRG MRMRSWGKWV SEILEPRKKS RIWLGTFATL EMAVRAHDVT  60
TLSIKGEFTI LNFPHFVILL PQPVSLMPHD IQVVVAKAIF RVEIPSALNI NSYNNPTILQ  120
WTQALTRNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-18575273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6163996e-36JX616399.1 Gossypium hirsutum clone NBRI_GE61030 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016747439.11e-91PREDICTED: ethylene-responsive transcription factor ERF036-like
SwissprotQ9M0805e-38ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLA0A1U8PB123e-90A0A1U8PB12_GOSHI; ethylene-responsive transcription factor ERF036-like
STRINGGorai.003G063500.12e-51(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.12e-40ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]