PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D07G1550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 764aa MW: 85399.5 Da PI: 6.5342 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.2 | 1.8e-19 | 621 | 719 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 +kvl++sdv+++gr+vlpkk ae+h +++ + ++ + +ed ++r+W++++++ ++ks++y+l+ ++ +Fv+ ngL+egDf+v++ ++ ++++ Gh_D07G1550 621 QKVLKQSDVGNLGRIVLPKKEAETHlpELEARDGISIAMEDiGTSRVWNMRYSFrfwpNNKSRMYLLE-NTGDFVRTNGLQEGDFIVIY--SDvKCGK 715 79*************************999999********7778*******9999988888888888.********************..5559998 PP .EEE CS B3 92 lvvk 95 ++++ Gh_D07G1550 716 YLIR 719 8776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-26 | 615 | 730 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10015 | 9.96E-36 | 618 | 721 | No hit | No description |
SuperFamily | SSF101936 | 4.12E-21 | 619 | 715 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.292 | 620 | 724 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.8E-15 | 620 | 724 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-15 | 621 | 718 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009657 | Biological Process | plastid organization | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001076 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 764 aa Download sequence Send to blast |
MRGVQQQQQQ QNMGDEDVHA VGGNEGNPSG FDDVVVEVER VMGSEEREMW LDRQQDDELL 60 DVNDASIFYG DFPPLPDFPC MSSSSSSSST PAPVKAIACS SSASTASSSS SAASWAVLKS 120 DADEDMERKS NGHHIHLHHH RHQNYVQNSH QQEHHGKVDG TAAALSSTAS MEIPQPPDQN 180 VMDGIDCMDV MENFGYMDLI DNNDLFDPSS IFHHDDNGLE EFQQDQQNQQ QQEHDSTQQQ 240 LGKQVGAMMY SKNEDQTQEE KASDDLAMVF LEWLKTNKET VSAEDLRRVK IKKATIECAA 300 RRLGGGKEAM KQLLKLILEW VQTNHLQRRR IKESASNNHP DHPCQYSNPN NLNPSSNPNL 360 NCNPILPSEP NSFFSQPAWV PQPAYTTDPG AAPPPLPGFT PVVGYMGDPF ANGAPNVTTH 420 HHPYQPPTDY QVLDTAQTWP PSQFALAASQ YNSFADNNLH PAPLQQQPSA FPGYVNQYPY 480 QYVPGHNNND QRLLRLGSSA TKEARKKRMA RQRRFASHHR NHGHHHNNQQ GQLQNQSIDQ 540 HERIVNGNCV ASAQANPGNW VYWPSVAGAL ASNPPPVLPG DVTMVHPVDQ TTMQGQTYQR 600 QVATDRRQGW KPEKNLRFLL QKVLKQSDVG NLGRIVLPKK EAETHLPELE ARDGISIAME 660 DIGTSRVWNM RYSFRFWPNN KSRMYLLENT GDFVRTNGLQ EGDFIVIYSD VKCGKYLIRG 720 VKVRQSGTKS ETKRPGKSQK NHHTNSPSAA VSGSLPTPIT QTVK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 9e-35 | 616 | 725 | 1 | 108 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 9e-35 | 616 | 725 | 1 | 108 | B3 domain-containing transcription factor FUS3 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the embryos, endosperm, and outer teguments of the seed throughout seed development. {ECO:0000269|PubMed:12657652}. | |||||
Uniprot | TISSUE SPECIFICITY: Isoform 2 accumulates only at the end of seed maturation. {ECO:0000269|PubMed:20525852}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Participates in abscisic acid-regulated gene expression during seed development. Regulates the transcription of SGR1 and SGR2 that are involved in leaf and embryo degreening. {ECO:0000269|PubMed:19531597, ECO:0000269|PubMed:24043799}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00083 | PBM | Transfer from AT3G24650 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by silencing mediated by polycomb group (PcG) protein complex containing EMF1 and EMF2. {ECO:0000269|PubMed:19783648}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX614337 | 4e-69 | JX614337.1 Gossypium hirsutum clone NBRI_GE57639 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016746111.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor ABI3-like isoform X1 | ||||
Swissprot | Q01593 | 0.0 | ABI3_ARATH; B3 domain-containing transcription factor ABI3 | ||||
TrEMBL | A0A1U8P4G1 | 0.0 | A0A1U8P4G1_GOSHI; B3 domain-containing transcription factor ABI3-like isoform X1 | ||||
STRING | Gorai.001G184300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10280 | 25 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 0.0 | B3 family protein |