PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D07G1485

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 152aa MW: 16802.5 Da PI: 6.8024

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D07G1485	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	63.6	4.1e-20	17	69	2	56
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrd +++ r +lg+f+taeeAa+a+++a+ +++g+ Gh_D07G1485 17 RYRGVRRRP-WGKYAAEIRDsTRQG--GPRLWLGTFDTAEEAARAYDRAAFSMRGH 69 69*****.******44334..4************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	23.248	17	76	IPR001471	AP2/ERF domain
SMART	SM00380	1.3E-31	17	82	IPR001471	AP2/ERF domain
Pfam	PF00847	4.2E-15	17	69	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.7E-21	17	77	IPR016177	DNA-binding domain
CDD	cd00018	3.30E-28	17	77	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.3E-29	17	77	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.5E-11	18	29	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.5E-11	42	58	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MEQNKMKKAG EAESSLRYRG VRRRPWGKYA AEIRDSTRQG GPRLWLGTFD TAEEAARAYD 60 RAAFSMRGHS AILNFRDEHI ISSTAVNSPP TATPSSSSSS SSSSSSSSAS AASSSSYSFE 120 HVKSKKDEER IVLELECLDD KLLEELLDFE NK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-29	17	83	14	79	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.3602	0.0	ovule

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	73861113	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ394934	1e-140	GQ394934.1 Gossypium hirsutum cultivar Delta Opal clone MONCS1957 SSR marker DPL0287 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016745691.1	1e-106	PREDICTED: ethylene-responsive transcription factor ERF096-like
Swissprot	Q9LTC5	2e-35	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	A0A1U8P3A4	1e-105	A0A1U8P3A4_GOSHI; ethylene-responsive transcription factor ERF096-like
STRING	Gorai.001G176600.1	1e-77	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM25048	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43410.1	5e-21	ERF family protein

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]