PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G1429
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 319aa    MW: 35424.2 Da    PI: 8.4915
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G1429genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.2e-091442129
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIar 29
                     +g+W +eEde+l+++++++G g+W++ ++
      Gh_D07G1429 14 KGPWGPEEDEILINYINKHGHGSWRSLPK 42
                     79***********************9877 PP
2Myb_DNA-binding48.81.6e-1591136148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E++l +++++ lG++ W++Ia+ ++ gRt++++k+ w+++l
      Gh_D07G1429  91 RGPFTLDEEKLVIQLHAILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 136
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-23588IPR009057Homeodomain-like
PROSITE profilePS5129410.073985IPR017930Myb domain
SuperFamilySSF466891.0E-7943IPR009057Homeodomain-like
SMARTSM007178.6E-101387IPR001005SANT/Myb domain
PfamPF002492.2E-71442IPR001005SANT/Myb domain
CDDcd001673.40E-71685No hitNo description
SuperFamilySSF466898.98E-2271142IPR009057Homeodomain-like
PROSITE profilePS5129424.50686140IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-2589140IPR009057Homeodomain-like
SMARTSM007172.0E-1490138IPR001005SANT/Myb domain
PfamPF002491.7E-1491136IPR001005SANT/Myb domain
CDDcd001674.40E-1193136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGRRPCCERK GLKKGPWGPE EDEILINYIN KHGHGSWRSL PKLSALWKFL FCRVSPLQPI  60
KGLISTLTGL SRCGKSCRLR WTNYLRPDIK RGPFTLDEEK LVIQLHAILG NRWAAIASQL  120
PGRTDNEIKN LWNTHLKKRL LCMGVDPLTH EPFTSGGPTT RPRSSPATRH MAQWESARLE  180
AEARLSKESL FFNSPPTSVK PDPDFFLRLW NSEVGESFRK LNGEAKADCR SPISQASSST  240
KCGSVSGVTI DVGPIAAGSS TPKSSRTEDP IMFDASFSSS SNESEDSSDT ALQLLLDFPI  300
NNDMSFLDDV DTYATPPQC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24121405108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269|PubMed:19232308}.
UniprotTISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4591691e-67AJ459169.1 Gossypium hirsutum partial myb139 gene, clone pGhMYB139.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016745626.10.0PREDICTED: transcription factor MYB51-like isoform X1
SwissprotQ9M2D91e-116MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A0D2NAE80.0A0A0D2NAE8_GOSRA; Uncharacterized protein
STRINGGorai.001G169700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69822643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-115myb domain protein 17