PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D07G1384 | ||||||||
Common Name | WRKY5, WRKY56 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 335aa MW: 38298 Da PI: 5.7047 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.1 | 8.5e-29 | 112 | 173 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK++ gs+fpr+YYrCt++ gC + k+v+rs+edp+++e++Y+g+H ++ Gh_D07G1384 112 LDDGYCWRKYGQKDILGSNFPRAYYRCTHRysqGCLAGKQVQRSDEDPTIFEVKYRGRHACN 173 59***************************99999*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-27 | 102 | 174 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.101 | 107 | 170 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.66E-25 | 110 | 174 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.9E-38 | 112 | 174 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.4E-24 | 113 | 172 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MEKTMGWEQN TLLNELAQGR DFTNMLRKHL HPSSSPETRQ VLLDKILCSY DKALSLLNCS 60 RFMVETKPRV RTLGSPENDA SDNKDMFKKR KTSSGWSEQI RVCSAMSLEG PLDDGYCWRK 120 YGQKDILGSN FPRAYYRCTH RYSQGCLAGK QVQRSDEDPT IFEVKYRGRH ACNQVPHLVA 180 TPKEKGNHYR EKQQVEEKQK QSKEMLLSFE TGLKVKTEDL DNREDIFPSF SFPIESEEVQ 240 NGLLLNSLMK NMSPAFVSPA TSESNYFSVS AFHMGNFDFG QNVQTSESEL TEIISAPASV 300 TNSPIVDLDI SSLEKLELDQ SFPYDNPEFF TNFLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-20 | 112 | 172 | 8 | 68 | OsWRKY45 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.8727 | 0.0 | boll| leaf| ovule| root| stem |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF669781 | 0.0 | KF669781.1 Gossypium hirsutum WRKY transcription factor 5 (WRKY5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016745575.1 | 0.0 | PREDICTED: probable WRKY transcription factor 46 | ||||
TrEMBL | A0A059Q7R8 | 0.0 | A0A059Q7R8_GOSHI; WRKY transcription factor 56 | ||||
STRING | Gorai.001G155800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4888 | 23 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 7e-56 | WRKY DNA-binding protein 46 |
Publications ? help Back to Top | |||
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