PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G1340
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 503aa    MW: 56223.4 Da    PI: 5.0175
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G1340genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.7e-12323368454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  Gh_D07G1340 323 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEL 368
                  799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.0E-5326208IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.015319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-17320381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.68E-14322373No hitNo description
PfamPF000107.4E-10323368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16323381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-16325374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MEELIISPSS SSSLVYMTQE TSPSTLQQRL QFVVQSQQIW WTYAIFWQTS NDEHGRLYLC  60
WADGYFQGTT KGTPPKLLSA NNSCLENERR KEMKGAQTLI RDNHEVDVSM MDGTTGVSDA  120
VWFYVMSLTR SFPAGEGIPG MALGTGSLVW LTGAHALQFY NCERAIEAQM HGIETMVCIP  180
TSCGVLELGS VEMISENWGL VQQVKSLFGA DPIDLVQKQS STDPTLTPPS IPFLDRNISF  240
ADIGIISGVQ EEEEEDVGPD NETKQEHHNH PTKKYFTKLG QSSSVDSEHS DSDRPSLAMS  300
HLEQKTPQKR GRKPGLGRET PLNHVEAERQ RREKLNHRFY ALRAVVPNVS RMDKASLLSD  360
AVSYINELKA KIEELESQLQ RECKKPKVEM VDVTDNHSTT TSVEQEAAKP DNSPSPATAG  420
CVGLEFDIKI MGNDAMIRVQ SENANYPVTR LMVALRDLEF PIHHASMSCV NETMLQDIVV  480
NVPDLELRNE QGLKSALLRR LDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-32252088192Transcription factor MYC3
4rqw_B1e-32252088192Transcription factor MYC3
4rs9_A1e-32252088192Transcription factor MYC3
4yz6_A1e-32252088192Transcription factor MYC3
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6158010.0JX615801.1 Gossypium hirsutum clone NBRI_GE60007 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016747755.10.0PREDICTED: transcription factor MYC3-like
TrEMBLA0A1U8P9C80.0A0A1U8P9C8_GOSHI; transcription factor MYC3-like
STRINGGorai.001G151700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.12e-63NACL-inducible gene 1