PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D07G0951 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WOX | ||||||||
Protein Properties | Length: 246aa MW: 27391.6 Da PI: 6.2443 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.5 | 1.5e-20 | 18 | 77 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++tkeq+ +Le+l+ + r+psa+++++++++l +++ ++V++WFqN++a++++ Gh_D07G0951 18 SRWNPTKEQISILESLYLQgLRTPSADQIQQITSRLkaygSIEGKNVFYWFQNHKARQRQ 77 6*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 115.3 | 3e-37 | 17 | 79 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +RW+Pt+eQi iLe+ly +GlrtP++++iq+it++L++yG ie+kNVfyWFQN+kaR+rqkq Gh_D07G0951 17 DSRWNPTKEQISILESLYLQGLRTPSADQIQQITSRLKAYGSIEGKNVFYWFQNHKARQRQKQ 79 68***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.835 | 13 | 78 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.07E-12 | 15 | 83 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.9E-6 | 15 | 82 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.5E-18 | 18 | 77 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-8 | 18 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.07E-7 | 19 | 79 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MEGGNMDTSG DGGTTGDSRW NPTKEQISIL ESLYLQGLRT PSADQIQQIT SRLKAYGSIE 60 GKNVFYWFQN HKARQRQKQK KQNLAYINRY LYWTTQPVYP PPPPHGINVA CGPHFLPQVE 120 LGIYPQTQCP KVLFPGGDER RERPAKMGKP LQRDYNTMLP HAENFEGLLN ISNHETLELF 180 PLHPTGLLET KETLMSPPGS TNSAGISIIT PSISCETTAG IDEEGSGTGE QQFFDFFTSQ 240 GSSARD |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ527993 | 2e-34 | HQ527993.1 Gossypium herbaceum clone NBRI_E_EYT27PB03GID8O simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016747713.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 2-like | ||||
TrEMBL | A0A1U8PBM4 | 0.0 | A0A1U8PBM4_GOSHI; WUSCHEL-related homeobox 2-like | ||||
STRING | Gorai.001G108900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6914 | 28 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 4e-36 | WUSCHEL related homeobox 2 |