PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G0654
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 312aa    MW: 35797.7 Da    PI: 4.5263
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G0654genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81e-1996149356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k++++t +q++ Le+ Fe ++++  e++++LAk+lgL+ rqV +WFqNrRa++k
  Gh_D07G0654  96 KKRRLTVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARWK 149
                  56689************************************************9 PP
2HD-ZIP_I/II127.65.5e-4195185191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrrl+ +qv++LE+sFe e+kLeperK++la+eLglqprqva+WFqnrRAR+ktkqlEkdy++L++++++lk++  +L ke+++L++e+
  Gh_D07G0654  95 EKKRRLTVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARWKTKQLEKDYDTLQASFNTLKDDYGNLLKEKDKLKQEV 185
                  69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.41E-2084153IPR009057Homeodomain-like
PROSITE profilePS5007117.70291151IPR001356Homeobox domain
SMARTSM003891.1E-1994155IPR001356Homeobox domain
PfamPF000465.2E-1796149IPR001356Homeobox domain
CDDcd000861.58E-1896152No hitNo description
Gene3DG3DSA:1.10.10.603.1E-2098158IPR009057Homeodomain-like
PRINTSPR000314.0E-6122131IPR000047Helix-turn-helix motif
PROSITE patternPS000270126149IPR017970Homeobox, conserved site
PRINTSPR000314.0E-6131147IPR000047Helix-turn-helix motif
PfamPF021831.3E-12151187IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MAGGRVFSCN NTNSVGGSNN LSVLLQSQRV PSSSEPMDPL FIPRPGSSPY SFFVSGTRSM  60
VSFEDVHGGN RSFFRSFDEE ENGDEDLDEY FHQPEKKRRL TVDQVQFLEK SFEVENKLEP  120
ERKTQLAKEL GLQPRQVAIW FQNRRARWKT KQLEKDYDTL QASFNTLKDD YGNLLKEKDK  180
LKQEVLTFES LIEFKPLYGF GLILILVYQV LQLTDKLVMK EKNNSELSDV NTVCQEPPQK  240
PVDSDSPHSS YPFEPDQSDT SQDEEDNLSK ALFQPSSYIF PKLEDNDYSD PPASSCSYGF  300
HVEDHAFWSS AY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143151RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.212780.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469806.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X1
RefseqXP_016744331.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X1
TrEMBLA0A0D2PVF90.0A0A0D2PVF9_GOSRA; Uncharacterized protein
STRINGGorai.001G073600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-43homeobox 1