PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G0480
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 293aa    MW: 32831.2 Da    PI: 8.7559
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G0480genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-11131178455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++e+L++l+P +    +k   Ka iL + ++Y++sL+
  Gh_D07G0480 131 SHSLAERVRRKKISERMEKLQRLVPGC----DKITGKALILDEIINYVQSLE 178
                  8*************************9....899***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-17125195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.65E-11125182No hitNo description
PROSITE profilePS5088815.974127177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-17127194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-9131178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-9133183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MASFSTKSNP FLIDSIFSPH KISGFVEEIE NLNFDQVYSE NNEPSGSIFK EQSSTGEFTV  60
VDDIVALTSK KRRAKNGVKD EKEGKSKKQK KGNDEKKAYK GCKKDRKKGG EEPPNGRYIH  120
VRARRGQATD SHSLAERVRR KKISERMEKL QRLVPGCDKI TGKALILDEI INYVQSLESQ  180
VEFLSMKIAT LNPMFYDLGV DPESFMVKPE MVNNISSPPQ CYPTQPITTT AAAIGTAATF  240
TPTNNIPLLD TSAAFLFHQG ETSAVFSQFQ DNGSVLWEVE GLRQEFLNPF RSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16974KKRRAK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.34171e-168ovule
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO738596481e-168
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012467415.10.0PREDICTED: transcription factor bHLH137 isoform X1
TrEMBLA0A2P5QCK40.0A0A2P5QCK4_GOSBA; Uncharacterized protein
STRINGGorai.001G054900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87962439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.25e-49bHLH family protein