PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G0427
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 176aa    MW: 19893.9 Da    PI: 5.7936
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G0427genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-191364156
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 ++y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++aa  +++ge
  Gh_D07G0427 13 CKYRGVRMRS-WGKWVSEIREPKK---NSRIWLGTFPTAEMAARAHDAASIAIKGE 64
                 79*****998.**********976...4*********************9988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-131364IPR001471AP2/ERF domain
CDDcd000183.90E-321371No hitNo description
Gene3DG3DSA:3.30.730.101.8E-311472IPR001471AP2/ERF domain
PROSITE profilePS5103222.9061471IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-211471IPR016177DNA-binding domain
SMARTSM003806.0E-361477IPR001471AP2/ERF domain
PRINTSPR003675.3E-111526IPR001471AP2/ERF domain
PRINTSPR003675.3E-113753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MKPNASNNHE KSCKYRGVRM RSWGKWVSEI REPKKNSRIW LGTFPTAEMA ARAHDAASIA  60
IKGESAYLNF PKLAHQLPRP ATCSHRDIQK AANEAAHGNG NGNGMVGEEE EERFEGEATS  120
STTMSSEDSD LSMWFDLPDL SLEPDGTHHR FGFNSWWQHE QAGIHTDFQF EETIME
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-1814711472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6165730.0JX616573.1 Gossypium hirsutum clone NBRI_GE61335 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016747223.11e-131PREDICTED: ethylene-responsive transcription factor ERF035-like
SwissprotQ8LBQ78e-44ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1U8PAA41e-130A0A1U8PAA4_GOSHI; ethylene-responsive transcription factor ERF035-like
STRINGGorai.001G049800.11e-129(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60490.11e-33ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]