PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G0318
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 309aa    MW: 34653.5 Da    PI: 8.5761
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G0318genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.33.8e-29153212159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dg++WrKYGqK+ k ++fpr+Y+rC++a  Cpvkkkv+r+ ed++++  tYeg+Hnhe
  Gh_D07G0318 153 VKDGFQWRKYGQKVTKHNPFPRAYFRCSMApACPVKKKVQRCMEDKNFLMATYEGRHNHE 212
                  58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-29146212IPR003657WRKY domain
PROSITE profilePS5081125.339148214IPR003657WRKY domain
SuperFamilySSF1182904.32E-25149213IPR003657WRKY domain
SMARTSM007742.2E-32153213IPR003657WRKY domain
PfamPF031061.5E-23154212IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MVAVKIMKVE QKGKFLKTLA DLVLMMSSGL RNPEFKTKRE DQIPFRQPTF MDVPSSVKDK  60
VEGVEAELEQ LQKENAALRL MLQVMSNKYK MLSEAYFRES NSQVPTICRG LTRFDLCEDQ  120
HSHKNILIPQ LQLAANSSQV FVETDPRDES HIVKDGFQWR KYGQKVTKHN PFPRAYFRCS  180
MAPACPVKKK VQRCMEDKNF LMATYEGRHN HEVNPSIGQS LSSPTSSATT SISGFPNSVL  240
DNPLRSAIAL DLNLSSENSC GNGNDDDYNN KRSMEDHVAA SLAKDPSFTL ALAAAVARSI  300
TEHPKPPTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-211522151375WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.108310.0root| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4384650.0KM438465.1 Gossypium aridum WRKY52 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016744621.10.0PREDICTED: WRKY transcription factor 18-like
TrEMBLA0A2P5QT630.0A0A2P5QT63_GOSBA; Uncharacterized protein
STRINGGorai.001G037800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2469333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.12e-38WRKY DNA-binding protein 18