PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D07G0194

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TALE

Protein Properties

Length: 577aa MW: 64040.9 Da PI: 6.0308

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D07G0194	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	25.9	1.7e-08	496	534	18	54
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp+ +e+ LA k gLt +qV++WF N R + Gh_D07G0194 496 MFQNflHPYPKDAEKHLLAIKSGLTRSQVSNWFINARVR 534 5887779******************************88 PP
2	BELL	79.9	3.5e-26	373	442	2	72
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 ++ +++kk++Ll+ll+ Vd+rY+q+ ++++tvis+F+a+++l++ ++++s+Al++iS+ +++L+++i++qi Gh_D07G0194 373 KRTVEAKKTQLLTLLQVVDDRYSQCLDEIHTVISAFHAATELDP-RVHASFALHTISFLYKNLRERISNQI 442 56789*************************************.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.5E-24	295	440	IPR006563	POX domain
Pfam	PF07526	1.2E-26	301	439	IPR006563	POX domain
PROSITE profile	PS50071	11.046	475	538	IPR001356	Homeobox domain
CDD	cd00086	2.07E-11	478	539	No hit	No description
SMART	SM00389	7.8E-6	478	542	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.25E-15	479	546	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.8E-26	481	544	IPR009057	Homeodomain-like
Pfam	PF05920	1.3E-14	495	534	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence Send to blast
MEDDMFSIPR PMVSQNSVVI NGIPPEIITN NSVVESNLFN QINQNQTLVG FPVLPSVQGE 60 FGGDLCSDLH VSNHARFFDS NALIASVGRK VASDASLGSS GLEHNIEFHE QFIGRTPVSS 120 NSPASCGLQE NLNELAIVAP SIYPQDFRNY SSTECSDGIN STTVTSVNSV LNEVFGSMTN 180 KWDFEKFPGP LEHVGKTTLK TAFQPYSSIG CPDPNSWMAP NGANMSLDYP CGSSKNSNEL 240 SLSLATSLPG VINGNNIPDQ SSEINCCLNT TRLGSEQTSS NAKELSLSFG SDGPVQVSHL 300 ISGSRYLHAV QEILAQIANY SLENLEQMSV GPGATMPFSA SCLAGRWMAV MDSNDCPNVD 360 GNTEVQLEAE LQKRTVEAKK TQLLTLLQVV DDRYSQCLDE IHTVISAFHA ATELDPRVHA 420 SFALHTISFL YKNLRERISN QILAMGANFN SGCTRDREKS FQNSFIQEQW LKKKDQIWRP 480 QRGLPEKSVS VLRAWMFQNF LHPYPKDAEK HLLAIKSGLT RSQVSNWFIN ARVRLWKPMI 540 EEMYLEMNKR KARQNEEGTK SNPRSQISIN HQRFNFN

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence Send to blast

MEDDMFSIPR PMVSQNSVVI NGIPPEIITN NSVVESNLFN QINQNQTLVG FPVLPSVQGE  60
FGGDLCSDLH VSNHARFFDS NALIASVGRK VASDASLGSS GLEHNIEFHE QFIGRTPVSS  120
NSPASCGLQE NLNELAIVAP SIYPQDFRNY SSTECSDGIN STTVTSVNSV LNEVFGSMTN  180
KWDFEKFPGP LEHVGKTTLK TAFQPYSSIG CPDPNSWMAP NGANMSLDYP CGSSKNSNEL  240
SLSLATSLPG VINGNNIPDQ SSEINCCLNT TRLGSEQTSS NAKELSLSFG SDGPVQVSHL  300
ISGSRYLHAV QEILAQIANY SLENLEQMSV GPGATMPFSA SCLAGRWMAV MDSNDCPNVD  360
GNTEVQLEAE LQKRTVEAKK TQLLTLLQVV DDRYSQCLDE IHTVISAFHA ATELDPRVHA  420
SFALHTISFL YKNLRERISN QILAMGANFN SGCTRDREKS FQNSFIQEQW LKKKDQIWRP  480
QRGLPEKSVS VLRAWMFQNF LHPYPKDAEK HLLAIKSGLT RSQVSNWFIN ARVRLWKPMI  540
EEMYLEMNKR KARQNEEGTK SNPRSQISIN HQRFNFN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-14	484	542	5	63	Homeobox protein Meis2
3k2a_B	2e-14	484	542	5	63	Homeobox protein Meis2
4xrs_A	2e-14	484	541	1	58	Homeobox protein Meis1
4xrs_B	2e-14	484	541	1	58	Homeobox protein Meis1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Down-regulated in the shoot apical meristem (SAM) upon floral induction. {ECO:0000269\|PubMed:17908157}.
Uniprot	TISSUE SPECIFICITY: Most abundant in flowers.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269\|PubMed:17908157}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016744810.1	0.0	PREDICTED: homeobox protein ATH1-like
Refseq	XP_016744811.1	0.0	PREDICTED: homeobox protein ATH1-like
Swissprot	P48731	1e-112	ATH1_ARATH; Homeobox protein ATH1
TrEMBL	A0A2P5Q7Z4	0.0	A0A2P5Q7Z4_GOSBA; Uncharacterized protein
STRING	Gorai.001G023100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8228	26	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32980.1	1e-110	homeobox gene 1

Publications ? help Back to Top
Khan M, et al. Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis. Plant Physiol., 2015. 169(3): p. 2166-86 [PMID:26417006]