PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G0168
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 292aa    MW: 32757.1 Da    PI: 9.2532
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G0168genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.26e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed+ll+ ++k +G g W+  +r+ g++R++k+c++rw++yl
      Gh_D07G0168 14 KGAWTALEDKLLASYIKAHGEGKWSDLSRRAGLKRCGKSCRLRWLNYL 61
                     79********************************************97 PP
2Myb_DNA-binding48.91.5e-1567113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w+++l
      Gh_D07G0168  67 RGNISRDEEELIIRLHNLLGNRLWSLIAGRLP-GRTDNEIKNYWNTVL 113
                      788999**************************.************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.734961IPR017930Myb domain
SuperFamilySSF466891.8E-2612109IPR009057Homeodomain-like
SMARTSM007177.2E-131363IPR001005SANT/Myb domain
PfamPF002491.8E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-221568IPR009057Homeodomain-like
CDDcd001672.64E-91661No hitNo description
PROSITE profilePS5129423.02462117IPR017930Myb domain
SMARTSM007172.0E-1466115IPR001005SANT/Myb domain
PfamPF002495.6E-1467113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2269116IPR009057Homeodomain-like
CDDcd001676.81E-1271113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGRSPSCPKE GLNKGAWTAL EDKLLASYIK AHGEGKWSDL SRRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SRDEEELIIR LHNLLGNRLW SLIAGRLPGR TDNEIKNYWN TVLRKRAKGQ  120
ASIGTPPSKS THKMLSTESG DCEPLRSPRA TKAKIKVILT KATRSSSKVR IPTQLPAAQH  180
TDKLRDGQLN STNNNQEMSG NIATVEAHNG TQVLDSLYSD GGGTDLLNEQ LKERDVEFEE  240
NPMQPLAFDE AMFKNWTVNP CLNGNDAMDF DSLALLLETD EFSFCRNINF QT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-251211725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1098886201e-166
Functional Description ? help Back to Top
Source Description
UniProtControls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3362841e-116AF336284.1 Gossypium hirsutum GHMYB36 (ghmyb36) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012487959.10.0PREDICTED: myb-related protein 308-like
SwissprotP102902e-58MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBLA0A346KJW30.0A0A346KJW3_GOSHI; Transcription factor TT2
STRINGGorai.001G020400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2438634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.15e-58myb domain protein 4
Publications ? help Back to Top
  1. Chen B,Wang X,Hu Y,Wang Y,Lin Z
    Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco.
    Mol. Biotechnol., 2004. 26(3): p. 187-92
    [PMID:15004287]
  2. Paz-Ares J,Ghosal D,Saedler H
    Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus.
    EMBO J., 1990. 9(2): p. 315-21
    [PMID:2303027]
  3. Cone KC,Burr FA,Burr B
    Molecular analysis of the maize anthocyanin regulatory locus C1.
    Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5
    [PMID:3025847]
  4. Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H
    The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators.
    EMBO J., 1987. 6(12): p. 3553-8
    [PMID:3428265]
  5. Scheffler B, et al.
    Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene.
    Mol. Gen. Genet., 1994. 242(1): p. 40-8
    [PMID:7904044]
  6. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]
  7. Singer T,Gierl A,Peterson PA
    Three new dominant C1 suppressor alleles in Zea mays.
    Genet. Res., 1998. 71(2): p. 127-32
    [PMID:9717435]