PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D07G0167

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 593aa MW: 66720.5 Da PI: 7.3584

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D07G0167	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	90.8	1.4e-28	409	492	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW+ ev aLi++r ++e+++r+ lk+p We+vs+ m++ g++rs+k+Ckekwen+nk+++k ke+ kkr s++s+tc+yfdql Gh_D07G0167 409 RWPIAEVEALIQVRCDLESKFREPGLKGPVWEQVSSLMSSFGYQRSAKKCKEKWENINKYFRKSKENGKKR-SQQSKTCSYFDQL 492 8******************************************************************98.78889*****9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.411	406	466	IPR017877	Myb-like domain
Pfam	PF13837	2.3E-20	408	494	No hit	No description
CDD	cd12203	1.27E-24	408	473	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence Send to blast
MHPIKYGAHH HHHHHHLQQQ QFMEDDDASS SASIFFISNP HNHQQQPVFP YPLHSQQHNK 60 QHENPVTHQL FHHQFQPFQH PESVHHHNQQ QPFLAVNFKL GLNENSGKKE AALPLNPQQN 120 GATFLHGNEQ QQQHSLFLPR CLPPQEDSPI KEPFWKPLNR LDNRQCSADG AKMVEGTKYN 180 KVLQQPGQST SVRSRNLDSK YGLFGELEAI YGLGKRGEAA QAGSGSALTG ENSPANVGPS 240 MNLTKFQEHD VVGANGGGGN VVATGVDHGS EASIGKEASL RKVQKKKRKM KMKEQLSSMV 300 VAFESLVKQV TDHQECLHKR FLEFIERMDK ERSVKEESWR QQEAEKRNRE AVARAHEQAL 360 ASSREALIVS YLEKITGESI NLPGKTPLLQ QPGNAMEPFN GVKVDNSSRW PIAEVEALIQ 420 VRCDLESKFR EPGLKGPVWE QVSSLMSSFG YQRSAKKCKE KWENINKYFR KSKENGKKRS 480 QQSKTCSYFD QLGQLYSRIP ITCPTSPTPL INSDIEVQKQ GDSDFLEAYI PERDLVTAQV 540 NISGNLKDSG MNIPKLDFDG IVGENVAQGS KVKYNESHES ELDGDDNDSD KGE

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence Send to blast

MHPIKYGAHH HHHHHHLQQQ QFMEDDDASS SASIFFISNP HNHQQQPVFP YPLHSQQHNK  60
QHENPVTHQL FHHQFQPFQH PESVHHHNQQ QPFLAVNFKL GLNENSGKKE AALPLNPQQN  120
GATFLHGNEQ QQQHSLFLPR CLPPQEDSPI KEPFWKPLNR LDNRQCSADG AKMVEGTKYN  180
KVLQQPGQST SVRSRNLDSK YGLFGELEAI YGLGKRGEAA QAGSGSALTG ENSPANVGPS  240
MNLTKFQEHD VVGANGGGGN VVATGVDHGS EASIGKEASL RKVQKKKRKM KMKEQLSSMV  300
VAFESLVKQV TDHQECLHKR FLEFIERMDK ERSVKEESWR QQEAEKRNRE AVARAHEQAL  360
ASSREALIVS YLEKITGESI NLPGKTPLLQ QPGNAMEPFN GVKVDNSSRW PIAEVEALIQ  420
VRCDLESKFR EPGLKGPVWE QVSSLMSSFG YQRSAKKCKE KWENINKYFR KSKENGKKRS  480
QQSKTCSYFD QLGQLYSRIP ITCPTSPTPL INSDIEVQKQ GDSDFLEAYI PERDLVTAQV  540
NISGNLKDSG MNIPKLDFDG IVGENVAQGS KVKYNESHES ELDGDDNDSD KGE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	279	288	LRKVQKKKRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012487856.1	0.0	PREDICTED: trihelix transcription factor GTL1-like
TrEMBL	A0A0D2N4K8	0.0	A0A0D2N4K8_GOSRA; Uncharacterized protein
STRING	Gorai.001G020300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16469	8	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	9e-48	Trihelix family protein