PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D06G2159 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | VOZ | ||||||||
Protein Properties | Length: 101aa MW: 11646.3 Da PI: 9.4132 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 101.1 | 1.4e-31 | 22 | 89 | 138 | 205 |
VOZ 138 hesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksakgkvskdsl 205 srkqvm+ef+glkrsyymdpq ++ f+wh yeyein++da+alyrle klvd+kksakg ++d+ Gh_D06G2159 22 CMSRKQVMNEFEGLKRSYYMDPQTLNRFKWHYYEYEINKCDACALYRLESKLVDGKKSAKGISANDTD 89 569**********************************************************8888765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 101 aa Download sequence Send to blast |
MNLVRKREQK TGLSQITTAV VCMSRKQVMN EFEGLKRSYY MDPQTLNRFK WHYYEYEINK 60 CDACALYRLE SKLVDGKKSA KGISANDTDT DGKTHGGVPM Q |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.3487 | 4e-56 | boll| ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012444209.1 | 9e-34 | PREDICTED: transcription factor VOZ1-like isoform X1 | ||||
Refseq | XP_012444210.1 | 9e-34 | PREDICTED: transcription factor VOZ1-like isoform X1 | ||||
Refseq | XP_012444211.1 | 9e-34 | PREDICTED: transcription factor VOZ1-like isoform X1 | ||||
Refseq | XP_012444212.1 | 9e-34 | PREDICTED: transcription factor VOZ1-like isoform X2 | ||||
Refseq | XP_012444213.1 | 9e-34 | PREDICTED: transcription factor VOZ1-like isoform X2 | ||||
Refseq | XP_016730807.1 | 9e-34 | PREDICTED: transcription factor VOZ1 | ||||
Refseq | XP_016730808.1 | 9e-34 | PREDICTED: transcription factor VOZ1 | ||||
Refseq | XP_016730809.1 | 9e-34 | PREDICTED: transcription factor VOZ1 | ||||
Swissprot | Q9SGQ0 | 3e-30 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A0D2V9E4 | 2e-68 | A0A0D2V9E4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.010G243300.1 | 4e-69 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-32 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
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