PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D06G2096

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 315aa MW: 36829.1 Da PI: 6.3787

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D06G2096	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.6	1.2e-49	29	163	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 l pGfrFhPtdeelv +yLk+kve+k +++ + ik+vdiyk++PwdLp+ + + +ekewyfF+kr +ky+++ r+nr+t sg+Wkatg dk++ Gh_D06G2096 29 LLPGFRFHPTDEELVGFYLKRKVEKKLFTI-DLIKHVDIYKFDPWDLPRvskiS--StvGEKEWYFFCKRGRKYKNSIRPNRVTVSGFWKATGIDKPI 123 579**********************999.99***********545443..344899********************************** PP NAM 93 lsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++ +glkk+Lv+y+g+a kg+ktdW+mhe+rl Gh_D06G2096 124 YGVgeyhNNSIIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 163 9877777778**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.58E-54	28	188	IPR003441	NAC domain
PROSITE profile	PS51005	54.021	29	188	IPR003441	NAC domain
Pfam	PF02365	2.2E-25	31	163	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MEDVEMEKMV SCNTAAAAAE EEEEEEDILL PGFRFHPTDE ELVGFYLKRK VEKKLFTIDL 60 IKHVDIYKFD PWDLPRVSKI SSTVGEKEWY FFCKRGRKYK NSIRPNRVTV SGFWKATGID 120 KPIYGVGEYH NNSIIGLKKS LVYYRGSAGK GTKTDWMMHE FRLPLDQNHA KDNFEEAEVW 180 TVCRIFKRDV TCRKHALDWQ NKKKNNNNKN NDNNININWN MQNISAISRT CSTEESENSL 240 EFLGEKEIEN FPGKLNQFSF TSDHHHHHHQ GTSQVLSFSN PNNGDGLFFG QQQWNDEFKP 300 VVDYNFGDSL LYSDW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-47	29	194	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-47	29	194	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-47	29	194	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-47	29	194	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-47	29	194	20	174	NAC domain-containing protein 19
3swm_B	2e-47	29	194	20	174	NAC domain-containing protein 19
3swm_C	2e-47	29	194	20	174	NAC domain-containing protein 19
3swm_D	2e-47	29	194	20	174	NAC domain-containing protein 19
3swp_A	2e-47	29	194	20	174	NAC domain-containing protein 19
3swp_B	2e-47	29	194	20	174	NAC domain-containing protein 19
3swp_C	2e-47	29	194	20	174	NAC domain-containing protein 19
3swp_D	2e-47	29	194	20	174	NAC domain-containing protein 19
4dul_A	1e-47	29	194	17	171	NAC domain-containing protein 19
4dul_B	1e-47	29	194	17	171	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016752074.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1
TrEMBL	A0A1U8PPC0	0.0	A0A1U8PPC0_GOSHI; transcription factor JUNGBRUNNEN 1-like isoform X1
STRING	Gorai.010G236700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	8e-79	NAC domain containing protein 42