PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G2087
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 390aa    MW: 42908.8 Da    PI: 8.9552
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G2087genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.71.7e-1477164186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ + +++ ++++pk   qCk++++ ++k+yk +k+    +  +  s++++f++l+
  Gh_D06G2087  77 CWSEGATEVLIDAWGERYLELSRGNLKQKHWKEVADIVsSREDYTKTPKtdiQCKNRIDTVKKKYKLEKAKVAAG--GGPSKWVFFEKLD 164
                  7*************************************866677776654449*****************99997..67778******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.8E-2675166No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MEEDEEIQSY PSVAATGSSS PSSPSPASNS RITVTVAAAP PPNSPPTDEP HEHEKAIVLA  60
LPPPQKPKSN GGVREDCWSE GATEVLIDAW GERYLELSRG NLKQKHWKEV ADIVSSREDY  120
TKTPKTDIQC KNRIDTVKKK YKLEKAKVAA GGGPSKWVFF EKLDQLIGPT AKVSASTTAA  180
VSGGGGSSSG GSADFLSKVP MGIPVGIRSS LNPFRVSQVR QQQQQQQQQQ QEKQPRMVVL  240
KNQRKQGPVD MDSEDDDDDG DDDADSFDSL PPPPTGKRAR RVVHNKSVNA GEKRRKWGNS  300
VKELTQAILQ FGEAYEQAET AKLQQVVEME KQRMKFAKEL ELQRMQFFMK TQLEISQLKQ  360
GKKGVGIFNS GNHHSKANNN NNNNNSDSSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291296EKRRKW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.166100.0ovule
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5270461e-146HQ527046.1 Gossypium herbaceum clone NBRI_A_EYI1BW401A822Y simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016752809.10.0PREDICTED: trihelix transcription factor ASIL2-like
SwissprotQ9LJG81e-112ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A1U8PRC50.0A0A1U8PRC5_GOSHI; trihelix transcription factor ASIL2-like
STRINGGorai.010G235700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62622543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-60sequence-specific DNA binding transcription factors