PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D06G1966 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 326aa MW: 35720.1 Da PI: 8.5564 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.7 | 1.4e-29 | 174 | 232 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 ++Dgy+WrKYGqK+ +++++pr+Y++C++a +Cpvkkkv+rs +d++v++ tYegeHnh Gh_D06G1966 174 VKDGYQWRKYGQKVTRDNPCPRAYFKCSFApSCPVKKKVQRSVDDQSVLVATYEGEHNH 232 58***************************99**************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-28 | 165 | 235 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.786 | 169 | 235 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.84E-25 | 170 | 235 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.4E-34 | 174 | 234 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-24 | 175 | 232 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050691 | Biological Process | regulation of defense response to virus by host | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MNILDLGLCL KIEKKAMNSS SSSWVDSLDL NASSTKSLQL ETPVSHPNTS NSLIVFGRKL 60 SVKEESGALV EELNRVNAEN KKLTEMLKAM CESYNALQSQ LVDLMNKNTE KELSPTKKRK 120 SETSNNNNGN IIGNSESSST DEEESCKKPR EEIIKAKISR AYVRTELSDT SLVVKDGYQW 180 RKYGQKVTRD NPCPRAYFKC SFAPSCPVKK KVQRSVDDQS VLVATYEGEH NHLPPSQIEA 240 TSGSSRLGSV PVGSTPVKSS SPTITLDLTN SIKSSDEARN SKPKLDSPEA TQYLVEHMAS 300 SLTKDPNFTA ALAAAISGRM FSTNSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-20 | 173 | 235 | 13 | 75 | WRKY transcription factor 1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.9568 | 0.0 | boll| ovule |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00251 | DAP | Transfer from AT1G80840 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF031092 | 0.0 | KF031092.1 Gossypium hirsutum WRKY transcription factor 47 (WRKY47) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012452426.1 | 0.0 | PREDICTED: probable WRKY transcription factor 40 isoform X1 | ||||
Swissprot | Q9SAH7 | 7e-98 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A1U8PV85 | 0.0 | A0A1U8PV85_GOSHI; probable WRKY transcription factor 40 isoform X1 | ||||
STRING | Gorai.010G222400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2477 | 28 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 5e-92 | WRKY DNA-binding protein 40 |