PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D06G1939 | ||||||||
Common Name | WRKY46 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 275aa MW: 31184.8 Da PI: 5.058 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 82.5 | 4.3e-26 | 128 | 188 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK++ +s++prsY+rC+++ gC++ k+v+r ++d+++ +itY g+H+++ Gh_D06G1939 128 EDGHAWRKYGQKNILNSKHPRSYFRCSHKhdqGCSAIKQVQRMEDDTQMYHITYIGTHTCR 188 8***************************99999*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.9E-26 | 113 | 188 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.761 | 122 | 185 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-24 | 124 | 188 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-36 | 127 | 189 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-25 | 128 | 188 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MDTLYPWPEP ETLSSNKKRV IQQLAEGQQC ATELQVIVLQ NNKPSQQAEE LVQKILWSFN 60 QTISMLAEAG HHDEVISQNQ ATCNDDCKSQ DSSESSKRSL SAFAKDKRGC YKRKRFAQTS 120 TVVSDKIEDG HAWRKYGQKN ILNSKHPRSY FRCSHKHDQG CSAIKQVQRM EDDTQMYHIT 180 YIGTHTCRGQ YSSMATPRID RLSPISKLES EEQTTTPSDV TDLDSMTMWT DVMMGGVGFE 240 ADAVSNMYSC TEITCLDLEP VELENGLQFD DPDFA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-26 | 120 | 188 | 1 | 69 | OsWRKY45 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.9193 | 0.0 | boll| leaf| ovule| stem |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF031091 | 0.0 | KF031091.1 Gossypium hirsutum WRKY transcription factor 46 (WRKY46) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001314656.1 | 0.0 | probable WRKY transcription factor 70 | ||||
TrEMBL | A0A059Q7R5 | 0.0 | A0A059Q7R5_GOSHI; WRKY transcription factor 46 | ||||
STRING | Gorai.010G219200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4061 | 27 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 1e-44 | WRKY DNA-binding protein 70 |