PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D06G1889 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 648aa MW: 73923.9 Da PI: 8.2391 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.8 | 5.8e-09 | 463 | 504 | 2 | 40 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 ++WT+eE ell ++ +++++g +W+ I++++g+gR+ +++ Gh_D06G1889 463 KPWTKEEIELLRKGTQKYPKGtsrRWEVISEYIGTGRSVEEI 504 69***********************************99876 PP | |||||||
2 | Myb_DNA-binding | 27.2 | 8.9e-09 | 591 | 635 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W++ + l++a k ++++ +W+++a ++ g+t +qck ++ Gh_D06G1889 591 VWSAVQERALIQALKTFPKEtsqRWERVATAVP-GKTVNQCKKKFA 635 6********************************.********9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46565 | 1.7E-20 | 92 | 175 | IPR001623 | DnaJ domain |
Gene3D | G3DSA:1.10.287.110 | 8.7E-21 | 94 | 199 | IPR001623 | DnaJ domain |
SMART | SM00271 | 2.1E-14 | 96 | 171 | IPR001623 | DnaJ domain |
Pfam | PF00226 | 1.7E-16 | 97 | 176 | IPR001623 | DnaJ domain |
CDD | cd06257 | 6.73E-13 | 97 | 168 | IPR001623 | DnaJ domain |
PROSITE profile | PS50076 | 18.349 | 97 | 179 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 1.6E-7 | 102 | 120 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 1.6E-7 | 120 | 135 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 1.6E-7 | 151 | 171 | IPR001623 | DnaJ domain |
PROSITE pattern | PS00636 | 0 | 156 | 175 | IPR018253 | DnaJ domain, conserved site |
Gene3D | G3DSA:1.10.10.60 | 3.5E-6 | 456 | 504 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 7.076 | 460 | 515 | IPR017884 | SANT domain |
SMART | SM00717 | 1.1E-7 | 461 | 514 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-7 | 463 | 504 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.86E-8 | 463 | 506 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.55E-6 | 464 | 504 | No hit | No description |
PROSITE profile | PS51293 | 10.24 | 587 | 642 | IPR017884 | SANT domain |
SMART | SM00717 | 3.8E-9 | 588 | 640 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-5 | 589 | 634 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.69E-9 | 590 | 644 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.2E-7 | 591 | 634 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.71E-6 | 592 | 638 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 648 aa Download sequence Send to blast |
MAVRTSIQLI SYSQELVDGQ PLYVSSNCLP VKALKYEPAG HSFHNAALKL FGCEEDDTTE 60 VDDQKVGNDK EQVYMPSSDS YSSKGKKKSG ADGKQQDHYA LLGLSHLRYL ATEDQIRKSY 120 REAALRHHPD KLANLLLAEE TEAAKQAKKD EIENHFKSIQ EAYEILIDPI KRRIYDSTDE 180 FDDEIPTECA PQDFFKVFGP AFMRNGRWSV TQPIPSLGDD STSLKDVDNF YNFWYSFKSW 240 REFPHADEYD LEQSESRDHK RWMERQNAKL SEKARKEEYA RIRALVDNAY KRDPRILRRK 300 EEEKAEKQRK KEAKVRAKQL QEEEAARAAE EERCRKEEEE KRAAEAALQH KKNKEKEKKL 360 LRKERTRLRA LSAPVLSQHL LDLSEEDVES LCMTLGFEQL RSLCDKMDNK EALERAKLIQ 420 DTRGYNSNRE EKKIDDTNGS HLNGSVDSNG SILSSSSSEK KEKPWTKEEI ELLRKGTQKY 480 PKGTSRRWEV ISEYIGTGRS VEEILKATKT VLLQKPDATK AFGSFLEKRK PAATIASPLS 540 TREEVEGVSM PSRTENTTAK TSSPEDSGKA ASNPVDVVSG NGVSSSSEQD VWSAVQERAL 600 IQALKTFPKE TSQRWERVAT AVPGKTVNQC KKKFALLKEN FRSKKSTA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5dje_A | 1e-20 | 186 | 296 | 13 | 123 | Zuotin |
5dje_B | 1e-20 | 186 | 296 | 13 | 123 | Zuotin |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.4941 | 1e-102 | boll| ovule| root |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016709102.1 | 0.0 | PREDICTED: dnaJ homolog subfamily C member 2-like | ||||
Refseq | XP_016709103.1 | 0.0 | PREDICTED: dnaJ homolog subfamily C member 2-like | ||||
Refseq | XP_016709104.1 | 0.0 | PREDICTED: dnaJ homolog subfamily C member 2-like | ||||
TrEMBL | A0A1U8L6T4 | 0.0 | A0A1U8L6T4_GOSHI; dnaJ homolog subfamily C member 2-like | ||||
STRING | Gorai.010G212800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2361 | 27 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11450.1 | 0.0 | DnaJ domain ;Myb-like DNA-binding domain |