PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G1887
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 648aa    MW: 73894.9 Da    PI: 8.0504
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G1887genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.85.8e-09463504240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++WT+eE ell ++ +++++g   +W+ I++++g+gR+ +++
      Gh_D06G1887 463 KPWTKEEIELLRKGTQKYPKGtsrRWEVISEYIGTGRSVEEI 504
                      69***********************************99876 PP
2Myb_DNA-binding25.53.1e-08591633343
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                       W++  +  l++a k ++++   +W+++a  ++ g+t +qck +
      Gh_D06G1887 591 VWSAVQERALIQALKTFPKEtsqRWERVATAVP-GKTVNQCKKK 633
                      6********************************.********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.96E-2093175IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1108.7E-2194199IPR001623DnaJ domain
SMARTSM002712.1E-1496171IPR001623DnaJ domain
CDDcd062578.74E-1397168IPR001623DnaJ domain
PROSITE profilePS5007618.34997179IPR001623DnaJ domain
PfamPF002261.7E-1697176IPR001623DnaJ domain
PRINTSPR006251.6E-7102120IPR001623DnaJ domain
PRINTSPR006251.6E-7120135IPR001623DnaJ domain
PRINTSPR006251.6E-7151171IPR001623DnaJ domain
PROSITE patternPS006360156175IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.603.3E-6456504IPR009057Homeodomain-like
PROSITE profilePS512937.076460515IPR017884SANT domain
SMARTSM007171.1E-7461514IPR001005SANT/Myb domain
SuperFamilySSF466894.86E-8463506IPR009057Homeodomain-like
PfamPF002492.2E-7463504IPR001005SANT/Myb domain
CDDcd001677.48E-6464504No hitNo description
PROSITE profilePS512938.012587642IPR017884SANT domain
SMARTSM007175.3E-8588640IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-5589645IPR009057Homeodomain-like
SuperFamilySSF466892.02E-8590644IPR009057Homeodomain-like
PfamPF002491.1E-6591633IPR001005SANT/Myb domain
CDDcd001671.01E-5592633No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MAVRTSIQLI SYSQELVDGQ PLYVSSNCLP VKALKYEPAG HAFHNAALKL FGCEEDDTTE  60
VDDQKVGNDK EQVYMPSSDS YSNKGKKKSG ADGKQQDHYA LLGLSHLRYL ATEDQIRKSY  120
REAALRHHPD KLANLLLAEE TEAAKQAKKD EIENHFKSIQ EAYEILIDPI KRRIYDSTDE  180
FDDEIPTECA PQDFFKVFGP AFMRNGRWSV TQPIPSLGDD STSLKDVDNF YNFWYSFKSW  240
REFPHADEYD LEQSESRDHK RWMERQNAKL SEKARKEEYA RIRALVDNAY KRDPRILRRK  300
EEEKAEKQRK KEAKVRAKQL QEEEAARAAE EERCRKEEEE KRAAEAALQH KKNKEKEKKL  360
LRKERTRLRA LSAPVLSQHL LDLSEEDVES LCMTLGIEQL RSLCDKMDNK EALERAKLIQ  420
DTRGYNSNRE EKKIDDTNGS HLNGSVDSNG SILSSSSSEK KEKPWTKEEI ELLRKGTQKY  480
PKGTSRRWEV ISEYIGTGRS VEEILKATKT VLLQKPDATK AFDSFLEKRK PAATIASPLS  540
TREEVEGVSM PSRTENTTAK TSGPEDSGKA ASNPVDVVSG NGVSSSSEQD VWSAVQERAL  600
IQALKTFPKE TSQRWERVAT AVPGKTVNQC KKKIALLKEN FRSKKSTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A1e-2018629613123Zuotin
5dje_B1e-2018629613123Zuotin
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.49416e-93boll| ovule| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016709837.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
RefseqXP_016709838.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
RefseqXP_016709839.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
TrEMBLA0A1U8L9L80.0A0A1U8L9L8_GOSHI; dnaJ homolog subfamily C member 2-like
STRINGGorai.010G212800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain