PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D06G1413

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

VOZ

Protein Properties

Length: 480aa MW: 53418.1 Da PI: 6.103

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D06G1413	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	415.8	7.5e-128	208	422	1	215
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelfdl 98 p+psaflgpkcalwdc+rpaqg + dycssfha+la+neg+pg+ pvlrp+gi+lkdgllfaalsak+qgk+vgipec+gaatakspwna+elfdl Gh_D06G1413 208 PSPSAFLGPKCALWDCPRPAQGLGGCLDYCSSFHAALAMNEGPPGMGPVLRPGGIGLKDGLLFAALSAKTQGKDVGIPECQGAATAKSPWNAPELFDL 305 89********************************************************************************************** PP VOZ 99 sllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksa 196 +l+ge+irewlffdkprrafesgnrkqrslpdy+grgwhesrkqvm+efgglkrsyymdpqp+++fewhlyeyein++da+alyrlelklvd+kksa Gh_D06G1413 306 LVLDGESIREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEINKCDACALYRLELKLVDGKKSA 403 ********************************************************************************************** PP VOZ 197 kgkvskdsladlqkklgrl 215 kgk kd+++ k++g+l Gh_D06G1413 404 KGKPVKDTVSYPHKHMGKL 422 ***************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MGKGSKNNCK SASHKLFKDK AKNRVDDLQG MFLDLQFARK ESRGIDVAVL EEQLHQMLRE 60 WKAELNEPSP ASSLQQGGSL GSFSSDICRL LQLCEEEDDA TSILAVPKPE PNNQSLQVGD 120 TAASQERYAV NQGQHECGFP LVDQCKESPS QVCTMSINSL EGATQLEYHQ FDLDQDFEHF 180 YTGYNGTEFC REDDAMPRTY SYLPSICPSP SAFLGPKCAL WDCPRPAQGL GGCLDYCSSF 240 HAALAMNEGP PGMGPVLRPG GIGLKDGLLF AALSAKTQGK DVGIPECQGA ATAKSPWNAP 300 ELFDLLVLDG ESIREWLFFD KPRRAFESGN RKQRSLPDYN GRGWHESRKQ VMNEFGGLKR 360 SYYMDPQPLN HFEWHLYEYE INKCDACALY RLELKLVDGK KSAKGKPVKD TVSYPHKHMG 420 KLPDGFHSEN NCCVKGRTKV NAKIGVGNFF STPNAVVPTS EKFEYGPSVQ YDYVGSYYLT

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MGKGSKNNCK SASHKLFKDK AKNRVDDLQG MFLDLQFARK ESRGIDVAVL EEQLHQMLRE  60
WKAELNEPSP ASSLQQGGSL GSFSSDICRL LQLCEEEDDA TSILAVPKPE PNNQSLQVGD  120
TAASQERYAV NQGQHECGFP LVDQCKESPS QVCTMSINSL EGATQLEYHQ FDLDQDFEHF  180
YTGYNGTEFC REDDAMPRTY SYLPSICPSP SAFLGPKCAL WDCPRPAQGL GGCLDYCSSF  240
HAALAMNEGP PGMGPVLRPG GIGLKDGLLF AALSAKTQGK DVGIPECQGA ATAKSPWNAP  300
ELFDLLVLDG ESIREWLFFD KPRRAFESGN RKQRSLPDYN GRGWHESRKQ VMNEFGGLKR  360
SYYMDPQPLN HFEWHLYEYE INKCDACALY RLELKLVDGK KSAKGKPVKD TVSYPHKHMG  420
KLPDGFHSEN NCCVKGRTKV NAKIGVGNFF STPNAVVPTS EKFEYGPSVQ YDYVGSYYLT

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.14931	0.0	boll

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016730237.1	0.0	PREDICTED: transcription factor VOZ1-like isoform X3
Refseq	XP_016733642.1	0.0	PREDICTED: transcription factor VOZ1-like isoform X3
Swissprot	Q9SGQ0	0.0	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A1U8MTS7	0.0	A0A1U8MTS7_GOSHI; transcription factor VOZ1-like isoform X3
STRING	Gorai.010G157200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6667	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	0.0	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]