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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Gh_D06G1384 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family | bHLH | ||||||||
| Protein Properties | Length: 178aa MW: 20256.9 Da PI: 9.4186 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 33.4 | 8.3e-11 | 14 | 61 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
HLH 6 nerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
+ +Er+RR +++ +++L +l+P+ +s+ s + L +A++YIksL+
Gh_D06G1384 14 KFIERNRRIQMKALYSKLNSLVPHH---TSREaISLPDQLDEATNYIKSLK 61
669*********************8...66666****************95 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 6.8E-12 | 8 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 11.287 | 8 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 1.08E-5 | 10 | 65 | No hit | No description |
| Gene3D | G3DSA:4.10.280.10 | 8.9E-11 | 11 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 2.8E-4 | 14 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 7.9E-7 | 15 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 178 aa Download sequence Send to blast |
MEINNPNPSK MDRKFIERNR RIQMKALYSK LNSLVPHHTS REAISLPDQL DEATNYIKSL 60 KANLERMKEM KDGLRGLVER ANTSRSYGSK SPQIQIQEIG SSLAIALNTG FNSQFIFNET 120 IRIVHEERVE VVNANFSVVD DDTVFHTIHL TTGEPSAAAR ISQRLNKFVH DVDASNKY |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016681492.1 | 1e-130 | PREDICTED: transcription factor bHLH36-like | ||||
| TrEMBL | A0A1U8ITQ8 | 1e-129 | A0A1U8ITQ8_GOSHI; transcription factor bHLH36-like | ||||
| STRING | Gorai.010G154100.1 | 1e-128 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM1278 | 25 | 92 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G20970.1 | 9e-36 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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