PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D06G1347

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 471aa MW: 52304.3 Da PI: 10.1447

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D06G1347	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.5	5.6e-07	5	36	3	35
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgR 35 W t+E++ll av ++G+++W+++a+++ +R Gh_D06G1347 5 TWGTWEELLLGGAVLRHGTRDWNLVASELR-TR 36 7****************************9.77 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00167	2.36E-4	5	52	No hit	No description
Pfam	PF00249	9.0E-6	5	52	IPR001005	SANT/Myb domain
SMART	SM00297	7.2E-14	84	368	IPR001487	Bromodomain
SuperFamily	SSF47370	6.15E-18	262	368	IPR001487	Bromodomain
Gene3D	G3DSA:1.20.920.10	3.7E-15	265	369	IPR001487	Bromodomain
CDD	cd04369	8.36E-16	268	363	No hit	No description
Pfam	PF00439	2.3E-12	273	353	IPR001487	Bromodomain
PROSITE profile	PS50014	9.849	279	349	IPR001487	Bromodomain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MITRTWGTWE ELLLGGAVLR HGTRDWNLVA SELRTRALSP FAFTPEACKA KYEDLQRRYS 60 GCKAWFEELR KQRMAELRRA LEESEDSIGS LESKLENLKA EKRNDSGVDY DSSPTESALP 120 CLKSEGFEFS SKDTCKDGLS AGSFTQEAQT NWAPDCQIPA AVPTEEMDSK PVGDALTSER 180 EKFSSIDKLA DALCGGKLLC IRKRRGKRKR KDCSKDTKEG SVGESEALCP ADVASALLCK 240 ETSVSNSAQI AKSSAVEDQS GGSTKEGIDD IMRIFSSVAE NDCASVFRRR LDSQKRGRYK 300 KMILRHMDFD TIRSRIVSNL IMSVRELFRD MLLVANNALV FYSKNTREYK SALHLRRIVT 360 TALWQHFKEY RGKVPMTTFT SNTPMHKPPA KPWSIHRGNR KPPGNASSNR NPVAGACHGS 420 KKTTAADSPA SDESLAVTKK VLASRPRKVS GGRTGQKSEA RTKGRKRSGG R

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MITRTWGTWE ELLLGGAVLR HGTRDWNLVA SELRTRALSP FAFTPEACKA KYEDLQRRYS  60
GCKAWFEELR KQRMAELRRA LEESEDSIGS LESKLENLKA EKRNDSGVDY DSSPTESALP  120
CLKSEGFEFS SKDTCKDGLS AGSFTQEAQT NWAPDCQIPA AVPTEEMDSK PVGDALTSER  180
EKFSSIDKLA DALCGGKLLC IRKRRGKRKR KDCSKDTKEG SVGESEALCP ADVASALLCK  240
ETSVSNSAQI AKSSAVEDQS GGSTKEGIDD IMRIFSSVAE NDCASVFRRR LDSQKRGRYK  300
KMILRHMDFD TIRSRIVSNL IMSVRELFRD MLLVANNALV FYSKNTREYK SALHLRRIVT  360
TALWQHFKEY RGKVPMTTFT SNTPMHKPPA KPWSIHRGNR KPPGNASSNR NPVAGACHGS  420
KKTTAADSPA SDESLAVTKK VLASRPRKVS GGRTGQKSEA RTKGRKRSGG R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	203	211	RRGKRKRKD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016681782.1	0.0	PREDICTED: uncharacterized protein LOC107900626 isoform X1
TrEMBL	A0A1U8IUJ4	0.0	A0A1U8IUJ4_GOSHI; uncharacterized protein LOC107900626 isoform X1
STRING	Gorai.010G150700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7607	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42150.1	1e-35	DNA-binding bromodomain-containing protein