PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D06G1197 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 412aa MW: 44262.5 Da PI: 6.7957 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.8 | 1.8e-20 | 191 | 240 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a+++a+++++g Gh_D06G1197 191 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 240 7********.**********7.....337*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.6E-14 | 191 | 240 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-22 | 191 | 249 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.3E-33 | 191 | 249 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-37 | 191 | 254 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.712 | 191 | 248 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 192 | 203 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.04E-14 | 199 | 250 | No hit | No description |
PRINTS | PR00367 | 1.1E-11 | 214 | 230 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MCLLNKVAHQ RGSGEYVRFP PAGYGGAEEE QDGYSHQIQS QQNQPMMMQQ HGNRAQATQM 60 SGLTHGVSGQ RAAAYGANLA GMASSSFGYS GSASAAPPSP SPSASPSGSG SGSGSGLWIG 120 QKRGREEEVT AQFIESLPSV QRNFAGFRGS IANSSCGATT VAEETASTVA PPTTSTETST 180 AAYEETAERR RYRGVRQRPW GKWAAEIRDP HKAARVWLGT FDTAEAAARA YDEAALRFRG 240 NRAKLNFPEN VRLVPQQMQN FPATQTSVSS SLTTHFPASD STSMPTYYDS LPLQSSANDM 300 LRDYWQYSQL LQNSGDLHGQ QATSLVDQMI QYSQFANIQQ PMVSSSFPSL PPSFAASGSS 360 SSSSSSASFP LLFAEQQQMS IFRQPSDRTQ ASESDFPVLP WSHPSHCPSS SG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-22 | 190 | 251 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX615320 | 1e-175 | JX615320.1 Gossypium hirsutum clone NBRI_GE59244 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016669683.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X1 | ||||
TrEMBL | A0A1U8I0E9 | 0.0 | A0A1U8I0E9_GOSHI; ethylene-responsive transcription factor ABR1-like isoform X1 | ||||
STRING | Gorai.010G131500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15224 | 8 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 4e-24 | ethylene response factor 110 |