PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D06G1078 | ||||||||
Common Name | WRKY83 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 312aa MW: 33942 Da PI: 6.7101 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.2 | 2.2e-30 | 157 | 215 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+ +++++pr+Y++C++a +Cpvkkkv+rsaedp++++ tYegeHnh+ Gh_D06G1078 157 RDGYQWRKYGQKVTRDNPCPRAYFKCSFApSCPVKKKVQRSAEDPSILVATYEGEHNHH 215 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.6E-29 | 146 | 215 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.488 | 151 | 217 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-25 | 153 | 215 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-34 | 156 | 216 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.1E-25 | 158 | 215 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MEPAWVDTTL DLNINPCFRT NKAMKREFEG DVVESAPVKY ESGVLVEELN RVSAENKKLT 60 KMLTVLCEQY YSLQHQFMEF VNKNPEIETA AAATTSSSKK RKAECEDYGA NMIGFSGNTE 120 TSSSDDGSPK TPKDCIKPKV SRVQVRTNPS DNSLIVRDGY QWRKYGQKVT RDNPCPRAYF 180 KCSFAPSCPV KKKVQRSAED PSILVATYEG EHNHHEHHHS PPAEISLSSN NNTPSSNTGS 240 GPVSSAPTKA SAPTVTLELL QPGLGGDETE RAALQIDAPA IQQILVHQMA ASLSRDPNFT 300 AALAAAISGG AV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-20 | 155 | 214 | 16 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 2e-20 | 155 | 214 | 16 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.10061 | 0.0 | boll| leaf| ovule| root |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF669836 | 0.0 | KF669836.1 Gossypium hirsutum WRKY transcription factor 83 (WRKY83) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001313836.1 | 0.0 | probable WRKY transcription factor 40 | ||||
TrEMBL | A0A1U8J4Q6 | 0.0 | A0A1U8J4Q6_GOSHI; probable WRKY transcription factor 40 | ||||
STRING | Gorai.010G118300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2477 | 28 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 1e-63 | WRKY DNA-binding protein 40 |
Publications ? help Back to Top | |||
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