PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D06G1019

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 477aa MW: 51553.2 Da PI: 9.0687

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D06G1019	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.1	4.9e-11	268	313	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Gh_D06G1019 268 HSIAERLRRVRIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 313 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.63E-16	261	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.32E-12	261	317	No hit	No description
PROSITE profile	PS50888	16.723	263	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-15	265	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-8	268	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.7E-12	269	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MHTELLSIFS KSKPQSKKKK RETRPFIFNL IHHQSKKKPL IMQPCSREMQ AMNSLLNPTQ 60 QIPLQDLQIN GNRHHHQQIH VPSSSQFQYP TPTSTTHHDD SFLEQILSST TSFPWSDETG 120 PPNPEDNNNA GFNYDDMVLA SKLRQHQING GAAGNPFAAM KMMLMMQQQQ QQQQMMLAGR 180 PTVASAAAGG GITTNHQGGE GSMQALYNVF GDGSLHGTMQ AKSFVGANSA TEMTQSQGSG 240 PTAGEAVTAP EKPKQRVRAR RGQATDPHSI AERLRRVRIA ERMKALQELV PNANKTDKAS 300 MLDEIIDYVK FLQLQVKVLS MSRLGGAAAV APLVSELYDF LFLLKGGGDC IQTSANGGSH 360 PRNSNGDQTP SANDRLTMTE HQVAKLMEED MGSAMQYLQE KGLCLMPISL ATAISSATSR 420 SRNPMINHEN PANGSHLLIQ SSGGDGPSSP SMSVLTVQSA TMGNGGLEGG AASVSKP

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MHTELLSIFS KSKPQSKKKK RETRPFIFNL IHHQSKKKPL IMQPCSREMQ AMNSLLNPTQ  60
QIPLQDLQIN GNRHHHQQIH VPSSSQFQYP TPTSTTHHDD SFLEQILSST TSFPWSDETG  120
PPNPEDNNNA GFNYDDMVLA SKLRQHQING GAAGNPFAAM KMMLMMQQQQ QQQQMMLAGR  180
PTVASAAAGG GITTNHQGGE GSMQALYNVF GDGSLHGTMQ AKSFVGANSA TEMTQSQGSG  240
PTAGEAVTAP EKPKQRVRAR RGQATDPHSI AERLRRVRIA ERMKALQELV PNANKTDKAS  300
MLDEIIDYVK FLQLQVKVLS MSRLGGAAAV APLVSELYDF LFLLKGGGDC IQTSANGGSH  360
PRNSNGDQTP SANDRLTMTE HQVAKLMEED MGSAMQYLQE KGLCLMPISL ATAISSATSR  420
SRNPMINHEN PANGSHLLIQ SSGGDGPSSP SMSVLTVQSA TMGNGGLEGG AASVSKP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.1743	1e-90	boll\| leaf\| ovule\| root\| stem

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF836432	0.0	KF836432.1 Gossypium hirsutum bHLH4 transcription factor (bHLH4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016683127.1	0.0	PREDICTED: transcription factor bHLH66-like isoform X1
Swissprot	Q9ZUG9	3e-79	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A0D2SQY0	0.0	A0A0D2SQY0_GOSRA; Uncharacterized protein
STRING	Gorai.010G112200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3042	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	7e-69	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]