PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G0389
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 221aa    MW: 24130.2 Da    PI: 5.6881
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G0389genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-183585155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++ykGVr ++ +g+Wv+eIr p   ++++r++lg++ t+e Aa+a++aa ++l+g
  Gh_D06G0389 35 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTPEAAARAYDAALLCLKG 85
                 59*****998.**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.11E-203593No hitNo description
Gene3DG3DSA:3.30.730.106.8E-303694IPR001471AP2/ERF domain
SMARTSM003806.8E-353699IPR001471AP2/ERF domain
PfamPF008471.2E-113685IPR001471AP2/ERF domain
PROSITE profilePS5103221.6943693IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-203694IPR016177DNA-binding domain
PRINTSPR003671.5E-83748IPR001471AP2/ERF domain
PRINTSPR003671.5E-85975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MVKTEHKIQP HQSKQMASSS SSSSSPPPPS SLCKKKYKGV RMRSWGSWVS EIRAPNQKTR  60
IWLGSYSTPE AAARAYDAAL LCLKGSSANL NFPLTSSHYV PDTIMSPKSI QRVAAAAANS  120
FVDDNPAAAA TPPISPPLAP STPSTTSSPS NQVDDDVFFI QALVDEPVSM MEPWYCFDSL  180
QMQSPKFGDQ VFNVTPFDPP SMTTIDDLYE EAGDIRLWSF C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-143594464ATERF1
3gcc_A1e-143594464ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.165829e-68ovule
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO738654259e-68
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed cotyledons, ovules and seeds of immature siliques. {ECO:0000269|PubMed:21069430}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6167761e-152JX616776.1 Gossypium hirsutum clone NBRI_GE61662 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016681453.11e-161PREDICTED: ethylene-responsive transcription factor ERF014-like
SwissprotQ9SFE42e-47ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBLA0A1U8IYM01e-159A0A1U8IYM0_GOSHI; ethylene-responsive transcription factor ERF014-like
STRINGGorai.010G048900.11e-133(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29992767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.11e-37ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]