PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D06G0331

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 133aa MW: 15127.3 Da PI: 10.4622

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D06G0331	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.3	1.9e-09	16	56	5	45
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k r++++NR AAr+sR+RKka++++Le L++ ++L Gh_D06G0331 16 KTLRKLAQNRKAARKSRLRKKAYVQQLESSQLRLSEIEQEL 56 6789************************8766666655555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.1E-7	8	60	No hit	No description
SMART	SM00338	5.7E-4	12	83	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.62E-7	16	60	No hit	No description
Pfam	PF00170	1.4E-6	16	56	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	19	34	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MVNTVDQSKS KSGYQKTLRK LAQNRKAARK SRLRKKAYVQ QLESSQLRLS EIEQELQKAR 60 QQGIFITSGL SGDHGHTVAG NAALGFDMEY GRWLDEHQRL INDLRLAVNS HMGDNELCIL 120 VGVSWHIMMR FTG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012438631.1	3e-72	PREDICTED: transcription factor HBP-1b(c38)-like
Refseq	XP_016703669.1	2e-72	PREDICTED: transcription factor HBP-1b(c38)-like isoform X1
Refseq	XP_016703670.1	2e-72	PREDICTED: transcription factor HBP-1b(c38)-like isoform X1
Refseq	XP_016703671.1	2e-73	PREDICTED: transcription factor HBP-1b(c38)-like isoform X2
Refseq	XP_017641831.1	2e-72	PREDICTED: transcription factor HBP-1b(c38)-like
Swissprot	Q5Z6N9	1e-50	TGAL3_ORYSJ; Transcription factor TGAL3
TrEMBL	A0A0B0NQX8	6e-71	A0A0B0NQX8_GOSAR; Transcription factor PERIANTHIA-like protein
TrEMBL	A0A0D2PX51	3e-71	A0A0D2PX51_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2T8B5	6e-71	A0A0D2T8B5_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8KMF9	5e-72	A0A1U8KMF9_GOSHI; transcription factor HBP-1b(C38)-like isoform X2
TrEMBL	A0A1U8KMK4	5e-71	A0A1U8KMK4_GOSHI; transcription factor HBP-1b(C38)-like isoform X1
TrEMBL	A0A2P5W3Z9	5e-71	A0A2P5W3Z9_GOSBA; Uncharacterized protein
STRING	Gorai.008G185000.1	1e-71	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-38	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]