PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D06G0275 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ZF-HD | ||||||||
Protein Properties | Length: 246aa MW: 27054 Da PI: 6.985 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.6 | 2.5e-32 | 52 | 109 | 2 | 60 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++vrY+eClkNhA+s+GghavDGC+Ef+++ g+egt++alkCaAC+CHRnFHR+e+e e Gh_D06G0275 52 TTVRYRECLKNHAVSIGGHAVDGCCEFIAA-GDEGTVEALKCAACNCHRNFHRKETEGE 109 589**************************9.999*********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 8.5E-30 | 54 | 106 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-21 | 55 | 107 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.4E-27 | 55 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.452 | 56 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-32 | 172 | 245 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.14E-20 | 173 | 244 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 6.0E-28 | 183 | 240 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MDFDEHDDQE EEMGMAVPPG YDSLGTLSET WSKPGPTTTG GGDGLARKVG STTVRYRECL 60 KNHAVSIGGH AVDGCCEFIA AGDEGTVEAL KCAACNCHRN FHRKETEGES NVYSYNPHYH 120 HHQQYPQFSP YYRAPPPAGY LHLTPPSQYR PLALPAASGG GGDSREEEDV SNPSSSGGGG 180 GSKKRFRTKF TAEQKEKMLD FAGKLGWRIQ KHDEAAIQQF CEETGVKRHV LKVWMHNNKN 240 TLGKKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 5e-29 | 182 | 241 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX616214 | 1e-131 | JX616214.1 Gossypium hirsutum clone NBRI_GE60696 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012450172.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 2-like | ||||
Swissprot | Q9SB61 | 1e-77 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A2P5YCS7 | 0.0 | A0A2P5YCS7_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.010G036300.1 | 1e-180 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4505 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 2e-73 | homeobox protein 22 |
Publications ? help Back to Top | |||
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