PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D06G0174 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 80aa MW: 9089.19 Da PI: 8.2462 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.9 | 8.9e-33 | 6 | 64 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYeg+Hnh+ Gh_D06G0174 6 HDDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAVEDPRMLIVTYEGDHNHS 64 69*************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 31.284 | 1 | 66 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.5E-34 | 2 | 64 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.98E-28 | 3 | 64 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.1E-37 | 5 | 65 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.8E-28 | 7 | 63 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 80 aa Download sequence Send to blast |
MADIPHDDYS WRKYGQKPIK GSPHPRGYYK CSSVRGCPAR KHVERAVEDP RMLIVTYEGD 60 HNHSHNITTD VPSALVLESS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-23 | 1 | 63 | 10 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.8955 | 1e-105 | boll| ovule |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ651068 | 1e-128 | HQ651068.1 Gossypium hirsutum WRKY17 transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012452137.1 | 1e-53 | PREDICTED: probable WRKY transcription factor 7 | ||||
Refseq | XP_017643814.1 | 9e-54 | PREDICTED: probable WRKY transcription factor 7 | ||||
Swissprot | O22176 | 8e-39 | WRK15_ARATH; Probable WRKY transcription factor 15 | ||||
TrEMBL | A0A0D2V4G4 | 1e-52 | A0A0D2V4G4_GOSRA; Uncharacterized protein | ||||
TrEMBL | R9Q8W6 | 2e-52 | R9Q8W6_GOSHI; WRKY17 transcription factor | ||||
STRING | Gorai.010G022600.1 | 5e-53 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1715 | 28 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23320.1 | 3e-41 | WRKY DNA-binding protein 15 |
Publications ? help Back to Top | |||
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