PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G3883 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | EIL | ||||||||
Protein Properties | Length: 612aa MW: 69328.3 Da PI: 5.4577 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 517.6 | 5.6e-158 | 47 | 419 | 1 | 353 |
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkek 98 +el++r w+ +m+lkrlke++k ke ++ +k+++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgkpv+gasd+Lr+WWk+k Gh_D05G3883 47 DELERRLWRYKMRLKRLKEQHKG----KEG-IDIAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLREWWKDK 139 79******************998....788.******************************************************************* PP XXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--.---- CS EIN3 99 vefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdqgtppyk 196 v+fdrngpaai+kyqa+nli++++++++ ++h+l+elqDTtlgSLLsalmqhcdppqrrfplekgv+pPWWPtG+e+ww++lgl+kdqg+ppyk Gh_D05G3883 140 VRFDRNGPAAIAKYQADNLIPGKNDGCNN-IGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPTGNEEWWPQLGLPKDQGPPPYK 236 ***************************76.9******************************************************************* PP -GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 197 kphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss...slrkqspkvtlsceqkedvegkkesk 291 kphdlkkawkv+vLtavikhmsp+i++ir+l+rqsk+lqdkm+akes+++l+++nqee+++++++++s s+ +s ++++++ +++dveg +++ Gh_D05G3883 237 KPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALARELYPDSCpplSSGGGSGSFVINDCNEYDVEGAEDEP 334 *******************************************************************444456666****************777766 PP .XXXXXXXXXX..........................XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXX CS EIN3 292 ikhvqavktta..........................gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqne 353 +vq+ k + ++++ rkrk ++++ +++ +++ ++tc+ q+++se +l+f d++++++++ Gh_D05G3883 335 NFDVQELKPGHlntsnfsmdtmravqqqsypikgvvnNLDFMRKRK-PSDDLNMM-EHK-IYTCEFLQCPYSELRLGFRDRTARDNHQ 419 699*****9999*********************************8.55555555.554.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04873 | 4.7E-130 | 47 | 294 | No hit | No description |
Gene3D | G3DSA:1.10.3180.10 | 4.5E-77 | 167 | 304 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
SuperFamily | SSF116768 | 9.81E-63 | 173 | 297 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 612 aa Download sequence Send to blast |
MMFDEMTMCG DMNFFSAPLG EKDVAVSQSE AEATVEDDYT DEEVDVDELE RRLWRYKMRL 60 KRLKEQHKGK EGIDIAKQRQ SQEQARRKKM SRAQDGILKY MLKMMEVCKA QGFVYGIIPE 120 KGKPVTGASD NLREWWKDKV RFDRNGPAAI AKYQADNLIP GKNDGCNNIG PTPHTLQELQ 180 DTTLGSLLSA LMQHCDPPQR RFPLEKGVPP PWWPTGNEEW WPQLGLPKDQ GPPPYKKPHD 240 LKKAWKVGVL TAVIKHMSPD IAKIRKLVRQ SKCLQDKMTA KESATWLAII NQEEALAREL 300 YPDSCPPLSS GGGSGSFVIN DCNEYDVEGA EDEPNFDVQE LKPGHLNTSN FSMDTMRAVQ 360 QQSYPIKGVV NNLDFMRKRK PSDDLNMMEH KIYTCEFLQC PYSELRLGFR DRTARDNHQL 420 TCPFRNSSAQ FGGSNFNVNE VKPVIFPQPF APSKPAAPSI TSAPTPYELS GLGVPEDGQK 480 MISELMSIYD NNIQGNKNMN PGNNPGTEGQ NLLQSKSQPQ QDEFFNGHQG VMMEGNFFEE 540 SSMPRNHQMF MQGEGQFDRF KGLNSPFEAS HNNNSFQLMF GSPFDLASFD YKEDLQAVGV 600 DTMPKQDVSI WF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4zds_A | 2e-86 | 172 | 304 | 2 | 134 | Protein ETHYLENE INSENSITIVE 3 |
4zds_B | 2e-86 | 172 | 304 | 2 | 134 | Protein ETHYLENE INSENSITIVE 3 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.6413 | 0.0 | boll| embryo| ovule| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor acting as a positive regulator in the ethylene response pathway. Is required for ethylene responsiveness in adult plant tissues. Binds a primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter with consequence to activate the transcription of this gene. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ525317 | 0.0 | HQ525317.1 Gossypium herbaceum clone NBRI_B2_520 simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016688618.1 | 0.0 | PREDICTED: protein ETHYLENE INSENSITIVE 3-like | ||||
Swissprot | O24606 | 0.0 | EIN3_ARATH; Protein ETHYLENE INSENSITIVE 3 | ||||
TrEMBL | A0A1U8JIX0 | 0.0 | A0A1U8JIX0_GOSHI; protein ETHYLENE INSENSITIVE 3-like | ||||
STRING | Gorai.009G105400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2135 | 28 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20770.1 | 0.0 | EIL family protein |