PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G3873
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 494aa    MW: 54693.7 Da    PI: 6.9734
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G3873genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.5e-17155204155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Gh_D05G3873 155 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 204
                  78*******************......55************************997 PP
2AP241.14.3e-13247297155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  Gh_D05G3873 247 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 297
                  89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-16155213IPR016177DNA-binding domain
PfamPF008474.0E-9155204IPR001471AP2/ERF domain
SMARTSM003806.4E-32156218IPR001471AP2/ERF domain
PROSITE profilePS5103217.754156212IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-17156212IPR001471AP2/ERF domain
CDDcd000181.80E-23156211No hitNo description
CDDcd000183.53E-25247307No hitNo description
PfamPF008471.3E-8247297IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-17247306IPR016177DNA-binding domain
SMARTSM003802.8E-32248311IPR001471AP2/ERF domain
PROSITE profilePS5103215.527248305IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-16248306IPR001471AP2/ERF domain
PRINTSPR003675.1E-6249260IPR001471AP2/ERF domain
PRINTSPR003675.1E-6287307IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MLDLNLNVAS TESTQDAACA TLVTNKLNEY CGNQMDESET SNSSIVNDDD ESCSTRANGD  60
AFTLSFDILK VGSGETEYGN DDAPVVVTKE LFPVKRVGED FRSPEGQSSG SSNYNKWIDL  120
SFERKEVADP RVMQQQQPSQ TTVKKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV  180
YLGGFDTAHS AARAYDRAAI KFRGVDADIN FSLSDYEDDM KQMKNLTKEE FVHILRRQST  240
GFSRGSSKYR GVTLHKCGRW EARMGQFLGK KYIYLGLFDS EVEAARAYDK AAIKCNGREA  300
VTNFELSSYE GDIILDTSNE GNTHNLDLNL GRSPPVGNGS VENEEHPHFH SGTFDINGGK  360
SLRAENPAAA TVGPAYKGLA GTSDQRILWN SVYPKTSLHC FWIFKPCSER AMVRRVDIGP  420
PQGPPNWTCQ MRSQVRATAT PLFSTAASSG FSYLATTPAA AKPINQMTQN LCFTSSTATA  480
TNTAEINFQM QPPP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447124.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
SwissprotQ9SK031e-124RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A2P5QSD30.0A0A2P5QSD3_GOSBA; Uncharacterized protein
STRINGGorai.009G104200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58612747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-141related to AP2.7