PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D05G3665 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 170aa MW: 19339.6 Da PI: 9.9313 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.8 | 6.7e-10 | 120 | 156 | 9 | 47 |
HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++++a k++G g W+ I +++g ++ + q++s+ qk+ Gh_D05G3665 120 HQRFLEALKLYGRG-WRQIEEHVG-TKYAVQIRSHAQKF 156 89************.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF51658 | 7.01E-17 | 10 | 94 | IPR013022 | Xylose isomerase-like, TIM barrel domain |
Gene3D | G3DSA:3.20.20.150 | 3.2E-13 | 11 | 68 | IPR013022 | Xylose isomerase-like, TIM barrel domain |
Gene3D | G3DSA:3.20.20.150 | 1.9E-6 | 69 | 94 | IPR013022 | Xylose isomerase-like, TIM barrel domain |
PROSITE profile | PS51294 | 9.186 | 114 | 161 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.9E-7 | 120 | 155 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 3.1E-10 | 120 | 159 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 4.74E-4 | 120 | 157 | No hit | No description |
SuperFamily | SSF46689 | 3.68E-8 | 120 | 159 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MALFWCRVVI EETNSNLDEV VALAKELQGD KIRPLWGTAQ LFMHPRYMHG AATSSELGAA 60 QVKKAMEARF LEAAAAYKKK IGFNGTLLIE PKPQNLPNIS MTGMLQQHLT SCVNMGCLKH 120 QRFLEALKLY GRGWRQIEEH VGTKYAVQIR SHAQKFFSKA HCFEFITRFP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.16006 | 5e-78 | boll| leaf| ovule| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023915753.1 | 7e-44 | xylose isomerase-like | ||||
Swissprot | Q9FKK7 | 2e-33 | XYLA_ARATH; Xylose isomerase | ||||
TrEMBL | A0A1U8J8L7 | 1e-38 | A0A1U8J8L7_GOSHI; Xylose isomerase | ||||
STRING | Gorai.009G296100.1 | 2e-39 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18330.1 | 3e-20 | MYB_related family protein |